Published March 8, 2021
| Version 0.11.0
Software
Open
dandi/dandi-cli: 0.11.0
Authors/Creators
- 1. Dartmouth College, @Debian, @DataLad, @PyMVPA, @fail2ban
- 2. MIT
- 3. CatalystNeuro
- 4. Kitware
Description
🚀 Enhancement
- Update and simplify models to support automated editor generation #348 (@satra @yarikoptic @jwodder)
- Use separate session for S3 requests #330 (@jwodder)
- BF: no --develop-debug for download ATM #330 (@yarikoptic)
- RF: moved handling of dandiset identifier "deduction" into Dandiset itself #330 (@yarikoptic)
- BF(workaround): allow for "proper" identifier according to new schema #330 (@yarikoptic)
- Merge remote-tracking branch 'origin/master' into gh-320 #330 (@yarikoptic)
- Further fixes #330 (@jwodder)
- Give DandiAPIClient a dandi_authenticate() method #330 (@jwodder)
- Fixes #330 (@jwodder)
- Rename DANDI_API_KEY to DANDI_GIRDER_API_KEY #330 (@jwodder)
- Test of uploading & downloading via new API #330 (@jwodder)
- RF+ENH: support mapping for direct API urls, and use netflify insstance instead of api+ prefix #330 (@yarikoptic)
- Delint #330 (@jwodder)
- RF: account for web UI URL changes/dropped features, remove support for girder URLs #330 (@yarikoptic)
- Handle uploading already-extant assets #330 (@jwodder)
- Use new metadata schema #330 (@jwodder)
- Yield more from iter_upload() #330 (@jwodder)
- Document upload method parameters #330 (@jwodder)
- New API upload function #330 (@jwodder)
- Give dandi_instance a metadata_version field #330 (@jwodder)
- Split Docker Compose dandi_instances and fixtures in two #330 (@jwodder)
- Add dandi-api instance record #330 (@jwodder)
- Add dateModified to asset metadata #452 (@jwodder)
- fix: change enum to const for single enums #449 (@satra)
- Add --new-schema option to
lscommand for converting output #445 (@jwodder) - Eliminate check for session_start_time preceding date_of_birth #440 (@jwodder)
- Eliminate DANDI_SCHEMA; add get_schema_version() #442 (@jwodder)
- Discard empty "sex" and "species" fields on conversion #438 (@jwodder)
- schema: minor spotted typo fixes #435 (@yarikoptic)
- Retry requests on ConnectionErrors #437 (@jwodder)
- Include HDMF version as well into the token #434 (@yarikoptic)
- Error if sha256 digest is missing from asset being downloaded #428 (@jwodder)
- Report dandi version in User-Agent header #424 (@jwodder)
- Remove misleading log message about authenticating with new API #425 (@jwodder)
- Distinguish between pre- and post-validation when uploading #420 (@jwodder)
- Log failed HTTP connections; include PID and TID in logs; include asset path in upload log messages #418 (@jwodder)
- Revert PR #409 (Content-MD5 header) #419 (@jwodder)
- Set Content-MD5 header when uploading asset parts #409 (@jwodder)
- upload(): Only yield first "validating" status to pyout #417 (@jwodder)
- Add more logging when uploading & downloading #412 (@jwodder)
- Sleep increasing amounts while waiting for uploaded assets to validate #408 (@jwodder)
- Populate wasDerivedFrom #386 (@jwodder)
- FIX: use authorized checkout for actions #403 (@satra)
- enh: account for samples, sessions and participants #392 (@satra @jwodder @yarikoptic)
- Disabling logging to stderr while using pyout #401 (@jwodder)
- Cache file digests and check for change in digest when uploading #391 (@jwodder)
- Make existing="refresh" a synonym for "overwrite" for new upload #390 (@jwodder)
- RF/NF: Identifiable and BareAssetMeta to describe an asset anywhere #373 (@yarikoptic @jwodder)
- Give known_urls human-readable display strings #384 (@jwodder)
- Make
dandi download -i <instance>run in a Dandiset download that Dandiset #383 (@jwodder) - Give
validatecommand a--schema VERSIONoption for validating assets and dandiset.yaml #379 (@jwodder) - Support downloading folders and latest Dandiset version #377 (@jwodder @yarikoptic)
- Add
include_metadata=Falseparameter to asset-listing DandiAPIClient methods #378 (@jwodder @yarikoptic) - Discard invalid asset identifiers when extracting metadata #374 (@jwodder)
- Handle uploading already-present files in new API #347 (@jwodder)
- Adjust license metadata conversion #364 (@jwodder @yarikoptic)
- Give AssetMeta and DandiMeta
json_dict()methods for better dictification #346 (@jwodder) - BF: allow to handle an item with multiple files #342 (@yarikoptic)
- ENH: devel upload dandiset metadata #341 (@yarikoptic)
- Try self.listFile() again on ConnectionErrors #335 (@jwodder)
- Add functions for validating metadata against JSON Schema and use in tests #338 (@jwodder)
- Fix
AttributeError: 'Resource' object has no attribute 'values'#336 (@jwodder) - [DATALAD RUNCMD] Swap order of str and AnyUrl to be from specific to generic #334 (@yarikoptic)
- cleaning up biosample and participant #312 (@satra @jwodder)
- Tee all logs to user log directory #318 (@jwodder)
- Update for new API at https://api.dandiarchive.org/api #283 (@jwodder)
master
- Merge branch 'gh-320' (@yarikoptic)
- DOC: provide description for both DANDI_API_KEY and DANDI_GIRDER_API_KEY (@yarikoptic)
- ENH: log at DEBUG result.text from a failed response (@yarikoptic)
- ENH: allow for DeprecationWarning to come from requests_toolbelt, not our problem (@yarikoptic)
- Cache the individual functions called by validate_file() #446 (@jwodder)
- Simplify release workflow #444 (@jwodder)
- Check out dandi/dandi-api-datasets with direct
git clone#443 (@jwodder) - Use iter_content() instead of raw.stream() #423 (@jwodder)
- Update Black #426 (@jwodder)
- Assorted code cleanup #422 (@jwodder)
- Use fscacher #397 (@jwodder)
- Use PUT endpoint to replace pre-existing assets on upload #394 (@jwodder)
- Support passing precomputed file digest to DandiAPIClient upload methods #388 (@jwodder)
- Set asset path via metadata only #382 (@jwodder)
- Add script for migrating Dandiset metadata #366 (@jwodder)
- Add workflow for running populate_dandiset_yaml.py #363 (@jwodder)
- Configure & apply isort via pre-commit #353 (@jwodder)
- Sort install_requires #351 (@jwodder)
- Set DJANGO_DANDI_SCHEMA_VERSION in docker-compose.yml #429 (@jwodder)
- Add test of upload of large file to new API #415 (@jwodder)
- Capture all dandi log messages when testing #413 (@jwodder)
- Add CI run with dev version of pynwb #399 (@jwodder @yarikoptic)
- Add sample Dandiset test fixture #380 (@jwodder @yarikoptic)
- Add DANDI_TESTS_PERSIST_DOCKER_COMPOSE envvar for reusing Docker containers across test runs #354 (@jwodder)
- Fix numpy dependency issue in tests #356 (@jwodder)
- Fetch Django test API token more robustly #323 (@jwodder)
- Require keyring backends to be initialized before running any tests #326 (@jwodder)
- Install hdf5 for Python 3.9 tests #315 (@jwodder)
- Close a file in a test case #314 (@jwodder)
- John T. Wodder II (@jwodder)
- Satrajit Ghosh (@satra)
- Yaroslav Halchenko (@yarikoptic)
Files
dandi/dandi-cli-0.11.0.zip
Files
(200.8 kB)
| Name | Size | Download all |
|---|---|---|
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md5:29f1a0e17d1f2bdcdb9d420177bc11e6
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Additional details
Related works
- Is supplement to
- https://github.com/dandi/dandi-cli/tree/0.11.0 (URL)