PPPredSS Code

Dependencies

Here is the list of packages required for running the Python code:

pandas
torch
keras
numpy
tqdm
gensim
sklearn
nltk
spacy
networkx
en_core_web_sm

How to Run

1. Unzip sequences_labels.zip, word2vec_100_10_5.zip, propheno_scoms.zip, and propheno_masks.zip files located in the data directory.
2. Set the data_path to the data directory in the main.py file.
3. Run the main.py file using the following command:

python -m main

Jupyter Notebook

The notebook for the code is also available in the root folder which can be used as an alternative to the main.py.