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Published February 27, 2021 | Version v1
Software Open

PPPredSS Code

Authors/Creators

  • 1. Montana State University
  • 2. University of North Florida

Description

Dependencies

Here is the list of packages required for running the Python code:

pandas
torch
keras
numpy
tqdm
gensim
sklearn
nltk
spacy
networkx
en_core_web_sm

How to Run

  1. Unzip sequences_labels.zip, word2vec_100_10_5.zip, propheno_scoms.zip, and propheno_masks.zip files located in the data directory.
  2. Set the data_path to the data directory in the main.py file.
  3. Run the main.py file using the following command:

python -m main

Jupyter Notebook

The notebook for the code is also available in the root folder which can be used as an alternative to the main.py.

Files

PPPredSS-main.zip

Files (472.6 MB)

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md5:2fe6002638bfd1a3fe56ceba52d77ea7
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