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Published February 21, 2021 | Version 0.10.14
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ICB-DCM/pyABC: pyABC 0.10.14

  • 1. Helmholtz Munich + TUM
  • 2. IRU Biomathematics @ Uni Bonn
  • 3. CRTD, TU Dresden

Description

General:

  • Speed up parameter handling (30% internal speed-up) (#387)
  • Streamline testing via tox and pre-commit hooks, add flake8 config file (#408)
  • Update to python 3.9 (#411)
  • Extract PEtab bounds and nominal parameters (#416)
  • Allow specifying parameter names in density plots (#416)
  • Normalize look-ahead sampling by subpopulation ESS (#418, #421)

Documentation:

  • Update contribution and issue guidelines (#408)
  • Add example on yaml2sbml usage (#416)
  • Clean up user docs on parallelization and storage (#419)

Fixes:

  • Fix redis for later started workers (#410)
  • Fix PEtab parameter scale import, support all PEtab prior distributions (#413)

Database:

  • Add database migration scheme based on alembic (#419)
  • Store proposal ids, increment database version to 0 (#419)

Files

ICB-DCM/pyABC-0.10.14.zip

Files (19.5 MB)

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Additional details

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