Published December 26, 2020
| Version v1
Dataset
Open
SneakySnake: a fast and accurate universal genome pre-alignment filter for CPUs, GPUs and FPGAs
Authors/Creators
- 1. ETH Zurich
- 2. Bilkent University
Description
The first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. SneakySnake greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short (Illumina) and long (ONT and PacBio) reads.
Notes
arXiv version: https://arxiv.org/pdf/1910.09020.pdf
GitHub: https://github.com/CMU-SAFARI/SneakySnake
Files
ERR240727_1_E2_30million.zip
Files
(34.4 GB)
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md5:36d4146c98a795f0ef99bc55edcb1385
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md5:ecb54ca905eb5f28fb63d3c18b1f5c04
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md5:7f5b2a9fb63bc5c34d8addf683c76cce
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md5:af437a38b22186b83858bea1d0e57b01
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md5:5ac1690884ac397eb2d38d621cb6edb0
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1.3 GB | Preview Download |