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Published February 4, 2021 | Version 0.10.13
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ICB-DCM/pyABC: pyABC 0.10.13

Authors/Creators

  • 1. Helmholtz Munich + TUM
  • 2. IRU Biomathematics @ Uni Bonn
  • 3. CRTD, TU Dresden

Description

  • Update branch name master -> main in agreement with https://github.com/github/renaming (#406).
  • Notebook improvements:
    • Add ground truth to noise notebook.
    • Rename notebook "quickstart" -> "model_selection".
    • Split notebook tests in 2, extend, reduce test matrix (python 3.7).
  • Improve output at the beginning and end (e.g. no end_time at beginning; show duration).
  • Add walltime plots (plot_total_walltime, plot_walltime, plot_eps_walltime).
  • Make sure ABCSMC.run() is always properly finished (sampler, history) by a wrapper (all #401).
  • Redis sampler with look-ahead mode:
    • Fix insufficient logging of look-ahead samples.
    • Log all accepted particles.
  • Add plot_lookahead_... plots for look-ahead mode diagnostics.
  • Add global figure parameter settings for pyABC (all #405).

Files

ICB-DCM/pyABC-0.10.13.zip

Files (19.4 MB)

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Additional details

Related works

Is supplement to
https://github.com/ICB-DCM/pyABC/tree/0.10.13 (URL)