obophenotype/cell-ontology: 2021-01-22 release
Authors/Creators
- 1. Lawrence Berkeley National Laboratory
- 2. www.virtualflybrain.org
- 3. semanticly Ltd
- 4. University at Buffalo
- 5. University of São Paulo
- 6. Oregon Health and Science University
- 7. Stanford University
- 8. EMBL-EBI
- 9. @RENCI
- 10. @scibite
Description
- Ontology IRI:
http://purl.obolibrary.org/obo/cl.owl - Version IRI:
http://purl.obolibrary.org/obo/cl/releases/2020-11-11/cl.owl - Loaded from:
file:/work/knocean/cell-ontology/src/ontology/tmp/cl-lastbuild.owl
- Ontology IRI:
http://purl.obolibrary.org/obo/cl.owl - Version IRI:
http://purl.obolibrary.org/obo/cl/releases/2021-01-23/cl.owl - Loaded from:
file:/work/knocean/cell-ontology/src/ontology/tmp/cl-current.owl
- versionInfo "2020-11-11"^^string
- versionInfo "2021-01-23"^^string
http://purl.obolibrary.org/obo/CL_0000257
Removed
- Eumycetozoan cell label "Mycetozoan cell"^^string
Eumycetozoan cell label "Eumycetozoan cell"^^string
Eumycetozoan cell EquivalentTo native cell and (RO_0002160 some NCBITaxon_142796)
Eumycetozoan cell SubClassOf RO_0002160 some NCBITaxon_142796
http://purl.obolibrary.org/obo/NCBITaxon_142796
Added
- Class: NCBITaxon_142796
http://purl.obolibrary.org/obo/NCBITaxon_4751
Added
- Class: NCBITaxon_4751
http://purl.obolibrary.org/obo/CL_0002402
Removed
- Peyer's patch B cell SubClassOf BFO_0000050 some UBERON_0001211
- Peyer's patch B cell SubClassOf Peyer's patch lymphocyte
http://purl.obolibrary.org/obo/CL_0009015
Added
Peyer's patch follicular dendritic cell label "Peyer's patch follicular dendritic cell"
Peyer's patch follicular dendritic cell EquivalentTo follicular dendritic cell and (BFO_0000050 some UBERON_0001211)
Peyer's patch follicular dendritic cell SubClassOf follicular dendritic cell
Peyer's patch follicular dendritic cell SubClassOf BFO_0000050 some UBERON_0001211
http://purl.obolibrary.org/obo/CL_0009014
Added
Peyer's patch lymphocyte label "Peyer's patch lymphocyte"
Class: Peyer's patch lymphocyte
Peyer's patch lymphocyte EquivalentTo lymphocyte and (BFO_0000050 some UBERON_0001211)
Peyer's patch lymphocyte SubClassOf BFO_0000050 some UBERON_0001211
Peyer's patch lymphocyte SubClassOf lymphocyte
http://purl.obolibrary.org/obo/UBERON_0001241
Added
- Class: UBERON_0001241
http://purl.obolibrary.org/obo/UBERON_0001279
Added
- Class: UBERON_0001279
http://purl.obolibrary.org/obo/UBERON_0001984
Added
- Class: UBERON_0001984
http://purl.obolibrary.org/obo/UBERON_0004822
Added
- Class: UBERON_0004822
http://purl.obolibrary.org/obo/UBERON_0006841
Added
- Class: UBERON_0006841
http://purl.obolibrary.org/obo/UBERON_0009871
Added
- Class: UBERON_0009871
http://purl.obolibrary.org/obo/UBERON_0011189
Added
- Class: UBERON_0011189
http://purl.obolibrary.org/obo/UBERON_8300000
Added
- Class: UBERON_8300000
http://purl.obolibrary.org/obo/UBERON_8400006
Added
- Class: UBERON_8400006
http://purl.obolibrary.org/obo/UBERON_8400007
Added
- Class: UBERON_8400007
http://purl.obolibrary.org/obo/UBERON_8400008
Added
- Class: UBERON_8400008
http://purl.obolibrary.org/obo/CL_0008038
Added
- alpha motor neuron SubClassOf RO_0002120 some extrafusal muscle fiber
http://purl.obolibrary.org/obo/CL_0000548
Added
- animal cell EquivalentTo native cell and (RO_0002160 some NCBITaxon_33208)
http://purl.obolibrary.org/obo/CL_0000365
Added
animal zygote EquivalentTo zygote and (RO_0002160 some NCBITaxon_33208)
animal zygote SubClassOf zygote
http://purl.obolibrary.org/obo/CL_4023000
Added
beta motor neuron label "beta motor neuron"
Class: beta motor neuron
beta motor neuron SubClassOf lower motor neuron
beta motor neuron SubClassOf RO_0002120 some intrafusal muscle fiber
beta motor neuron SubClassOf RO_0002120 some extrafusal muscle fiber
http://purl.obolibrary.org/obo/CL_0019029
Added
centrilobular region hepatocyte label "centrilobular region hepatocyte"@en
centrilobular region hepatocyte EquivalentTo hepatocyte and (BFO_0000050 some UBERON_8400008)
centrilobular region hepatocyte SubClassOf hepatocyte
centrilobular region hepatocyte SubClassOf BFO_0000050 some UBERON_8400008
http://purl.obolibrary.org/obo/CL_0000722
Added
- cystoblast SubClassOf animal cell
http://purl.obolibrary.org/obo/CL_4023002
Added
dynamic beta motor neuron label "dynamic beta motor neuron"
Class: dynamic beta motor neuron
dynamic beta motor neuron SubClassOf beta motor neuron
http://purl.obolibrary.org/obo/CL_4023005
Added
dynamic nuclear bag fiber label "dynamic nuclear bag fiber"
Class: dynamic nuclear bag fiber
dynamic nuclear bag fiber SubClassOf nuclear bag fiber
http://purl.obolibrary.org/obo/CL_0000007
Removed
- early embryonic cell (metazoa) label "early embryonic cell"^^string
- early embryonic cell (metazoa) label "early embryonic cell (metazoa)"^^string
http://purl.obolibrary.org/obo/CL_0001087
Added
effector memory CD4-positive, alpha-beta T cell, terminally differentiated label "effector memory CD4-positive, alpha-beta T cell, terminally differentiated"
Class: effector memory CD4-positive, alpha-beta T cell, terminally differentiated
effector memory CD4-positive, alpha-beta T cell, terminally differentiated EquivalentTo CD4-positive, alpha-beta memory T cell and (RO_0002104 some PR_000001015) and (RO_0002162 some NCBITaxon_9606) and (has_completed some GO_0043379) and (lacks_plasma_membrane_part some PR_000001017) and (lacks_plasma_membrane_part some PR_000001203)
effector memory CD4-positive, alpha-beta T cell, terminally differentiated SubClassOf lacks_plasma_membrane_part some PR_000001017
effector memory CD4-positive, alpha-beta T cell, terminally differentiated SubClassOf RO_0002162 some NCBITaxon_9606
effector memory CD4-positive, alpha-beta T cell, terminally differentiated SubClassOf lacks_plasma_membrane_part some PR_000001203
effector memory CD4-positive, alpha-beta T cell, terminally differentiated SubClassOf RO_0002104 some PR_000001015
effector memory CD4-positive, alpha-beta T cell, terminally differentiated SubClassOf CD4-positive, alpha-beta memory T cell
effector memory CD4-positive, alpha-beta T cell, terminally differentiated SubClassOf RO_0002202 some effector memory CD4-positive, alpha-beta T cell
http://purl.obolibrary.org/obo/CL_0001062
Removed
effector memory CD8-positive, alpha-beta T cell, terminally differentiated EquivalentTo CD8-positive, alpha-beta memory T cell and (RO_0002104 some PR_000001015) and (RO_0002160 some NCBITaxon_9606) and (has_completed some GO_0043379) and (lacks_plasma_membrane_part some PR_000001017) and (lacks_plasma_membrane_part some PR_000001203)
effector memory CD8-positive, alpha-beta T cell, terminally differentiated SubClassOf RO_0002160 some NCBITaxon_9606
effector memory CD8-positive, alpha-beta T cell, terminally differentiated EquivalentTo CD8-positive, alpha-beta memory T cell and (RO_0002104 some PR_000001015) and (RO_0002162 some NCBITaxon_9606) and (has_completed some GO_0043379) and (lacks_plasma_membrane_part some PR_000001017) and (lacks_plasma_membrane_part some PR_000001203)
effector memory CD8-positive, alpha-beta T cell, terminally differentiated SubClassOf RO_0002162 some NCBITaxon_9606
http://purl.obolibrary.org/obo/CL_0002321
Removed
- embryonic cell (metazoa) label "embryonic cell"^^string
- embryonic cell (metazoa) label "embryonic cell (metazoa)"^^string
http://purl.obolibrary.org/obo/CL_0019022
Added
endothelial cell of pericentral hepatic sinusoid label "endothelial cell of pericentral hepatic sinusoid"@en
endothelial cell of pericentral hepatic sinusoid EquivalentTo endothelial cell of hepatic sinusoid and (RO_0002220 some UBERON_0006841)
endothelial cell of pericentral hepatic sinusoid SubClassOf RO_0002220 some UBERON_0006841
endothelial cell of pericentral hepatic sinusoid SubClassOf endothelial cell of hepatic sinusoid
http://purl.obolibrary.org/obo/CL_0019021
Added
endothelial cell of periportal hepatic sinusoid label "endothelial cell of periportal hepatic sinusoid"@en
endothelial cell of periportal hepatic sinusoid EquivalentTo endothelial cell of hepatic sinusoid and (RO_0002220 some UBERON_0001279)
endothelial cell of periportal hepatic sinusoid SubClassOf RO_0002220 some UBERON_0001279
endothelial cell of periportal hepatic sinusoid SubClassOf endothelial cell of hepatic sinusoid
http://purl.obolibrary.org/obo/CL_0000255
Added
- eukaryotic cell EquivalentTo native cell and (RO_0002160 some NCBITaxon_2759)
http://purl.obolibrary.org/obo/CL_0019020
Added
extrahepatic cholangiocyte label "extrahepatic cholangiocyte"@en
Class: extrahepatic cholangiocyte
extrahepatic cholangiocyte EquivalentTo cholangiocyte and (BFO_0000050 some UBERON_0004822)
extrahepatic cholangiocyte SubClassOf BFO_0000050 some UBERON_0004822
extrahepatic cholangiocyte SubClassOf cholangiocyte
http://purl.obolibrary.org/obo/CL_4006000
Added
fibroblast of breast label "fibroblast of breast"
Class: fibroblast of breast
fibroblast of breast EquivalentTo fibroblast and (BFO_0000050 some UBERON_0000310)
fibroblast of breast SubClassOf fibroblast
fibroblast of breast SubClassOf BFO_0000050 some UBERON_0000310
http://purl.obolibrary.org/obo/CL_4006001
Added
fibroblast of skin of scalp label "fibroblast of skin of scalp"
Class: fibroblast of skin of scalp
fibroblast of skin of scalp EquivalentTo fibroblast and (BFO_0000050 some UBERON_8300000)
fibroblast of skin of scalp SubClassOf skin fibroblast
fibroblast of skin of scalp SubClassOf BFO_0000050 some UBERON_8300000
http://purl.obolibrary.org/obo/CL_1000042
Added
- forebrain neuroblast SubClassOf neural cell
http://purl.obolibrary.org/obo/CL_0000521
Added
fungal cell EquivalentTo native cell and (RO_0002160 some NCBITaxon_4751)
fungal cell SubClassOf RO_0002160 some NCBITaxon_4751
http://purl.obolibrary.org/obo/CL_0008037
Added
gamma motor neuron label "gamma motor neuron"@en
Class: gamma motor neuron
gamma motor neuron SubClassOf RO_0002120 some intrafusal muscle fiber
gamma motor neuron SubClassOf lower motor neuron
http://purl.obolibrary.org/obo/CL_0000085
Added
hemocyte (sensu Arthropoda) http://purl.obolibrary.org/obo/CL_0000387
Added
- hemocyte (sensu Arthropoda) SubClassOf animal cell
http://purl.obolibrary.org/obo/CL_0009016
Added
intestinal crypt stem cell of large intestine label "intestinal crypt stem cell of large intestine"
intestinal crypt stem cell of large intestine EquivalentTo intestinal crypt stem cell and (BFO_0000050 some UBERON_0001984)
intestinal crypt stem cell of large intestine SubClassOf intestinal crypt stem cell
intestinal crypt stem cell of large intestine SubClassOf epithelial cell of large intestine
intestinal crypt stem cell of large intestine SubClassOf BFO_0000050 some UBERON_0001984
http://purl.obolibrary.org/obo/CL_0009017
Added
intestinal crypt stem cell of small intestine label "intestinal crypt stem cell of small intestine"
intestinal crypt stem cell of small intestine EquivalentTo intestinal crypt stem cell and (BFO_0000050 some UBERON_0001984)
intestinal crypt stem cell of small intestine SubClassOf intestinal crypt stem cell
intestinal crypt stem cell of small intestine SubClassOf BFO_0000050 some UBERON_0001984
intestinal crypt stem cell of small intestine SubClassOf epithelial cell of large intestine
http://purl.obolibrary.org/obo/CL_0008047
Added
- intrafusal muscle fiber SubClassOf neural cell
http://purl.obolibrary.org/obo/CL_0002538
Removed
intrahepatic cholangiocyte label "intrahepatic bile duct epithelial cell"^^string
intrahepatic cholangiocyte EquivalentTo branched duct epithelial cell and (BFO_0000050 some UBERON_0004823)
intrahepatic cholangiocyte SubClassOf branched duct epithelial cell
intrahepatic cholangiocyte label "intrahepatic cholangiocyte"^^string
intrahepatic cholangiocyte EquivalentTo cholangiocyte and (BFO_0000050 some UBERON_0004823)
intrahepatic cholangiocyte SubClassOf cholangiocyte
http://purl.obolibrary.org/obo/CL_0009018
Added
lymphocyte of large intestine lamina propria label "lymphocyte of large intestine lamina propria"
lymphocyte of large intestine lamina propria EquivalentTo lymphocyte and (BFO_0000050 some UBERON_0011189)
lymphocyte of large intestine lamina propria SubClassOf lymphocyte
lymphocyte of large intestine lamina propria SubClassOf BFO_0000050 some UBERON_0011189
http://purl.obolibrary.org/obo/CL_0019028
Added
midzonal region hepatocyte label "midzonal region hepatocyte"@en
Class: midzonal region hepatocyte
midzonal region hepatocyte EquivalentTo hepatocyte and (BFO_0000050 some UBERON_8400007)
midzonal region hepatocyte SubClassOf hepatocyte
midzonal region hepatocyte SubClassOf BFO_0000050 some UBERON_8400007
http://purl.obolibrary.org/obo/CL_0009019
Added
nephrogenic zone cell label "nephrogenic zone cell"
Class: nephrogenic zone cell
nephrogenic zone cell EquivalentTo kidney cortical cell and (BFO_0000050 some UBERON_0009871)
nephrogenic zone cell SubClassOf kidney cortical cell
nephrogenic zone cell SubClassOf BFO_0000050 some UBERON_0009871
http://purl.obolibrary.org/obo/CL_0000031
Added
- neuroblast (sensu Vertebrata) SubClassOf animal cell
http://purl.obolibrary.org/obo/CL_4023004
Added
nuclear bag fiber label "nuclear bag fiber"
Class: nuclear bag fiber
nuclear bag fiber SubClassOf intrafusal muscle fiber
http://purl.obolibrary.org/obo/CL_4023003
Added
nuclear chain fiber label "nuclear chain fiber"
Class: nuclear chain fiber
nuclear chain fiber SubClassOf intrafusal muscle fiber
http://purl.obolibrary.org/obo/CL_0000426
Removed
obsolete scaffold cell label "scaffold cell"^^string
obsolete scaffold cell SubClassOf apoptosis fated cell
- obsolete scaffold cell label "obsolete scaffold cell"^^string
http://purl.obolibrary.org/obo/CL_0011028
Added
olfactory ensheathing cell label "olfactory ensheathing cell"
Class: olfactory ensheathing cell
olfactory ensheathing cell SubClassOf glial cell
http://purl.obolibrary.org/obo/CL_0000023
Removed
- oocyte SubClassOf RO_0002160 some NCBITaxon_33208
- oocyte SubClassOf animal cell
http://purl.obolibrary.org/obo/CL_0009009
Added
paneth cell of epithelium of large intestine label "paneth cell of epithelium of large intestine"
paneth cell of epithelium of large intestine EquivalentTo paneth cell and (BFO_0000050 some UBERON_0001278)
paneth cell of epithelium of large intestine SubClassOf BFO_0000050 some UBERON_0001278
paneth cell of epithelium of large intestine SubClassOf paneth cell
paneth cell of epithelium of large intestine SubClassOf glandular cell of the large intestine
http://purl.obolibrary.org/obo/CL_0002624
Removed
- paneth cell of the appendix SubClassOf paneth cell
http://purl.obolibrary.org/obo/CL_0019026
Added
periportal region hepatocyte label "periportal region hepatocyte"@en
Class: periportal region hepatocyte
periportal region hepatocyte EquivalentTo hepatocyte and (BFO_0000050 some UBERON_8400006)
periportal region hepatocyte SubClassOf hepatocyte
periportal region hepatocyte SubClassOf BFO_0000050 some UBERON_8400006
http://purl.obolibrary.org/obo/CL_0000518
Added
- phagocyte (sensu Vertebrata) SubClassOf animal cell
http://purl.obolibrary.org/obo/CL_0000342
Added
- pigment cell (sensu Vertebrata) SubClassOf animal cell
http://purl.obolibrary.org/obo/CL_0002580
Removed
- preadipocyte of the breast SubClassOf BFO_0000050 some UBERON_0000310
- preadipocyte of the breast SubClassOf fibroblast of breast
http://purl.obolibrary.org/obo/CL_0011027
Added
skeletal muscle fibroblast label "skeletal muscle fibroblast"
Class: skeletal muscle fibroblast
skeletal muscle fibroblast EquivalentTo fibroblast and (BFO_0000050 some UBERON_0001134)
skeletal muscle fibroblast SubClassOf cell of skeletal muscle
skeletal muscle fibroblast SubClassOf muscle fibroblast
http://purl.obolibrary.org/obo/CL_4023001
Added
static beta motor neuron label "static beta motor neuron"
Class: static beta motor neuron
static beta motor neuron SubClassOf beta motor neuron
http://purl.obolibrary.org/obo/CL_4023006
Added
static nuclear bag fiber label "static nuclear bag fiber"
Class: static nuclear bag fiber
static nuclear bag fiber SubClassOf nuclear bag fiber
http://purl.obolibrary.org/obo/CL_0009010
Added
transit amplifying cell label "transit amplifying cell"
Class: transit amplifying cell
transit amplifying cell SubClassOf native cell
transit amplifying cell SubClassOf RO_0002202 some stem cell
http://purl.obolibrary.org/obo/CL_0009011
Added
transit amplifying cell of large intestine label "transit amplifying cell of large intestine"
transit amplifying cell of large intestine EquivalentTo transit amplifying cell and (BFO_0000050 some UBERON_0001984)
transit amplifying cell of large intestine SubClassOf BFO_0000050 some UBERON_0001984
transit amplifying cell of large intestine SubClassOf transit amplifying cell
transit amplifying cell of large intestine SubClassOf RO_0001000 some intestinal crypt stem cell
http://purl.obolibrary.org/obo/CL_0009012
Added
transit amplifying cell of small intestine label "transit amplifying cell of small intestine"
transit amplifying cell of small intestine EquivalentTo transit amplifying cell and (BFO_0000050 some UBERON_0001241)
transit amplifying cell of small intestine SubClassOf BFO_0000050 some UBERON_0001241
transit amplifying cell of small intestine SubClassOf transit amplifying cell
transit amplifying cell of small intestine SubClassOf RO_0001000 some intestinal crypt stem cell
http://purl.obolibrary.org/obo/CL_0010017
Added
Class: zygote
zygote SubClassOf native cell
Files
obophenotype/cell-ontology-v2021-01-22.zip
Files
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Additional details
Related works
- Is supplement to
- https://github.com/obophenotype/cell-ontology/tree/v2021-01-22 (URL)