Published January 11, 2021
| Version 1
Dataset
Open
Metagenome assemblies and metagenome-assembled genomes from the Daphnia magna microbiota
Creators
- 1. University of Nebraska-Lincoln
Description
Metagenome assemblies generated from raw reads not mapping to the Daphnia magna genome for six samples assembled individually (G4, G14, S1-S4) and a coassembly of all six samples (a_assembly) using metaSPAdes in SPAdes v3.14. Assemblies can be found in metagenome_assemblies.zip.
Metagenome-assembled genomes generated using VAMB v3.0.2 (vamb_bins.zip) and ProxiMeta (proximeta_bins.zip). These MAGs were taxonomically identified using GTDB-Tk v1.3 and quality checked using CheckM v1.1. Outputs from GTDB-Tk and CheckM can be found in the .tsv and .tab files, respectively.
Files
metagenome_assemblies.zip
Files
(114.6 MB)
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