Published December 18, 2020
| Version 1.1
Dataset
Open
Bakta database
Authors/Creators
- 1. Bioinformatics and Systems Biology, Justus Liebig University Giessen, Giessen, 35392, Germany; Institute of Medical Microbiology, Justus Liebig University Giessen, Giessen, 35392, Germany; German Centre for Infection Research (DZIF), partner site Giessen-Marburg-Langen, Giessen, Germany
Description
This data repository contains the mandatory DB for Bakta (db.tar.gz).
Bakta is a tool for the rapid & standardized local annotation of bacterial genomes & plasmids. It provides dbxref-rich and sORF-including annotations in machine-readble JSON & bioinformatics standard file formats for automatic downstream analysis: https://github.com/oschwengers/bakta
This db provides protein sequence hash digests and lengths of UniProt's UniRef100/UniRef90 clusters for ultra-fast identification & lookups. It has been pre-annotated with several specialized db and enriched with Dbxrefs. All conducted pre-annotations are logged and provided in the db.log.gz file.
External db used & versions:
- Rfam: 14.3
- UniProtKB/Swiss-Prot: 2020_05
- RefSeq: r202
- NCBI AMRFinderPlus: 2020-11-09.1
- COG: 2020
- ISFinder: 2019-09-25
- Mob-suite: 2.0
- DoriC: 10
- Pfam: 33.1
Files
versions.json
Additional details
Related works
- Is required by
- Software: https://github.com/oschwengers/bakta (URL)