Published December 16, 2020 | Version v0.1.0
Dataset Open

Processed TCGA BRCA and METABRIC datasets used in the Moanna manuscript

Authors/Creators

  • 1. Peter MacCallum Cancer Centre

Description

This dataset consists of the processed multi-omics data and clinical labels used for training and evaluating Moanna (https://github.com/rlupat/moanna). This dataset is processed based on raw files downloaded from cbioportal. 

  • (training) http://download.cbioportal.org/brca_metabric.tar.gz

  • (testing) http://download.cbioportal.org/brca_tcga_pan_can_atlas_2018.tar.gz

Files

Files (345.9 MB)

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Additional details

References

  • Curtis, C., et al., The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups. Nature, 2012. 486(7403): p. 346-52.
  • Pereira, B., et al., The somatic mutation profiles of 2,433 breast cancers refine their genomic and transcriptomic landscapes. Nature Communications, 2016. 7(1): p. 11479.
  • The Cancer Genome Atlas Research Network, Comprehensive molecular portraits of human breast tumours. Nature, 2012. 490(7418): p. 61-70.
  • Ciriello, G., et al., Comprehensive Molecular Portraits of Invasive Lobular Breast Cancer. Cell, 2015. 163(2): p. 506-19.
  • Cerami, E., et al., The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cancer Discov, 2012. 2(5): p. 401-4.
  • Gao, J., et al., Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal. Sci Signal, 2013. 6(269): p. pl1.