Allele information for eQTL and sQTL analysis

This dataset is part of the manuscript: "Atlas of genetic effects in human microglia transcriptome across brain regions, aging and disease pathologies", by Lopes KP, Snijders GJL, Humphrey J, et al.

Description of files:

snp_alleles.bed.gz - Allele information for all SNPs tested in the eQTL and sQTL analysis (bgzip-compressed)

Table columns are formatted as follows:

• #CHROM - chromosome position of the variant
• POS - position of the variant in the chromosome
• ALLELE1 - reference allele (GRCh38)
• ALLELE2 - alternative allele (this is the effect allele in the eQTL and sQTL analysis)
• ID - variant id (rsid or chr:position:ref:alt)