Published November 20, 2020
| Version 1.0
Dataset
Open
Bakta database
Authors/Creators
- 1. Bioinformatics and Systems Biology, Justus Liebig University Giessen, Giessen, 35392, Germany; Institute of Medical Microbiology, Justus Liebig University Giessen, Giessen, 35392, Germany; German Centre for Infection Research (DZIF), partner site Giessen-Marburg-Langen, Giessen, Germany
Description
This data repository contains the mandatory DB for Bakta (db.tar.gz).
Bakta is a tool for the rapid & standardized local annotation of bacterial genomes & plasmids. It provides dbxref-rich and sORF-including annotations in machine-readble JSON & bioinformatics standard file formats for automatic downstream analysis: https://github.com/oschwengers/bakta
This db provides protein sequence hash digests and lengths of UniProt's UniRef100/UniRef90 clusters for ultra-fast identification & lookups. It has been pre-annotated with several specialized db and enriched with Dbxrefs. All conducted pre-annotations are logged and provided in the db.log.gz file.
External db used & versions:
- Rfam: 14.2
- UniProtKB/Swiss-Prot: 2020_04
- RefSeq: r202
- NCBI AMRFinderPlus: 2020-09-22.2
- COG: 2014
- Mob-suite: 2.0
- DoriC: 10
Files
versions.json
Files
(42.9 GB)
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md5:4ac3b2100ba8e2427d25439637193f39
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18.0 GB | Download |
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md5:cdaa2f6661211ab6a429e58d0bcecb6f
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md5:d826e9ece7794981215ca6e568fd17b2
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125 Bytes | Preview Download |
Additional details
Related works
- Is required by
- Software: https://github.com/oschwengers/bakta (URL)