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Published October 24, 2020 | Version v0.12.0a1
Software Open

PartSeg - segmentation and reconstruction tool for 3D microscopy images

Authors/Creators

  • 1. Centre of New Technologies, University of Warsaw, Warsaw, Poland; Institute of Informatics, University of Warsaw, Warsaw, Poland
  • 2. Nencki Institute of Experimental Biology, Polish Academy of Sciences, Warsaw, Poland
  • 3. Institute of Informatics, University of Warsaw, Warsaw, Poland

Contributors

  • 1. Centre of New Technologies, University of Warsaw, Warsaw, Poland; Faculty of Mathematics and Information Science, Warsaw University of Technology, Warsaw, Poland

Description

0.12.0
  • Toggle multiple files widget in View menu
  • Toggle Left panel in ROI Analysis in View Menu
  • Rename Mask Segmentation to ROI Mask
  • Add documentation for interface
  • Add Batch processing tutorial
  • Add information about errors to batch processing output file
  • Load image from the batch prepare window
  • Add search option in part of list and combo boxes
  • Add drag and drop mechanism to load list of files to batch window.
Changes:
  • 3d022e9607af8ced15f19af82a534a6d6622b2fc add hook for save mask roi in napari
  • ea498f65b5e49ce69bd6f090d320f7562e65b6bf Move compiled parts to separate package (#145)
  • 1eaf3b4224905339e4a83041a33d072ecdb438fe fix sentry missed import for pyinstaller
  • d8192ad1934ef093671adfef236290ec80a3fccb Small fixes add napari classifier
  • 3d80cc47c0832cd826ba8b9a538bdcd1b9881e68 update interface documentation
  • aca37e46ef89721e1168784d43e3be6cbfd008c2 update changelog
  • ca549b96059d359e8c9fadc60a7349b17d41fd9e update libraries version for pyinstaller build
  • baaeda907c9389e61a46b976afe9f3bccbabda8a Documentation update (#143)
  • fcb1099f39f84f68dc6b2afa45e4ea6a5fc11117 Bump pyqt5 from 5.14.2 to 5.15.1 in /requirements (#120)

  • 88a9a80413b58fe7b13cc21971803709568457cd fix codecov badge <details><summary><b>See More</b></summary>

  • a6598a59068eda886a15090dd11a10debedc30e8 wrap index error on get_channel in algorithm

  • 76cfcaad3bd7d0438000b773b202fee99ee92e37 Report failed files in batch output file(#142)
  • a1a5da4801b71f4db9c0304f9dbf6cda8e9617e1 Search widgets (#137)
  • 62ace72ba37feb47e88154bef231754e473e9c64 Add codecov integration (#141)
  • cf9f77a01a02270b463fe398ef6bc687e9086d65 Fix tifffile warning from newest version of tifffile (#138)
  • dc3b2bbe3048b2383199e4ccfc5407ec138c1bbf rename MeasurementCalculate statistic_profile to measurement_profile
  • 2a216c2d73cfc28d10959b96348eb95461515a77 Fix bug in correction of names in calculation olan
  • aec038110032f64a8b35cd7deac8761b0428349a Rename segmentation to roi (#136)
  • eb9328ba7132f307939c0ade42ffbc2e674739fa AddFiles drag'n'drop missed files message clip
  • ab68ddb1559da2fb099236c3ce73347fb0a0b5a1 Preview image from batch (#135)

This list of changes was auto generated.</details>

Files

4DNucleome/PartSeg-v0.12.0a1.zip

Files (7.1 MB)

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Additional details

Related works

Is supplement to
https://github.com/4DNucleome/PartSeg/tree/v0.12.0a1 (URL)