Published October 22, 2020 | Version v1
Dataset Open

Raw Data to "Can Small Polyaromatics Describe Their Larger Counterparts for Local Reactions? A Computational Study on the H-Abstraction Reaction by an H-Atom from Polyaromatics"

Description

This data includes the Turbomole input files (without molecular orbitals) and output files (under DFT_and_CC_*tar) as well as the output of the xTB calculations (under xtb*tar) for different reactive sites of the polyaromatics (PAHs) studied in the related publication, for the reaction:
CXHY + H -> CXHY-1 + H2

File structure:

  • The xtb*tar contains the xTB (xTB version 6.3.1) optimized structures for the parameterizations GFN0, GFN1 and GFN2. The parameter set is indicated by the folder name "BACK_XTB_NATIVE_GFN0", "BACK_XTB_NATIVE_GFN1" and "BACK_XTB_NATIVE_GFN2"
     
  • The DFT calculations are carried out at the TPSSh-D3/TZVP level and they are directly under the subdirectories of dft*tar folders (C*H*) and are used to calculate the data under Figure 3 and 4 of the related publication, as well as to calculate partition functions which are listed under freeh.out, the output of the freeh program of Turbomole.
     
  • The coupled cluster calculations are always located under the subdirectories of the DFT calculations.
     
  • The subdirectories PNO-CC.tz are PNO-CCSD/cc-pVTZ calculations and the output files are named as 'pnoccsd.out.tpno.7' or 'pnoccsd.out.tpno.8', where 7 and 8 stands for the PNO selection thresholds of 10-7 and 10-8, which are used to produce the data under Table 11 of the related publication.
     
  • The subdirectories CC.atz.f12, CC.dz, and CC.tz under C6H6* and C10H8* correspond to R(O)HF-CCSD(F12*)(T)/aug-cc-pVTZ, R(O)HF-CCSD(T)/cc-pvDZ and R(O)HF-CCSD(T)/cc-pvTZ calculations respectively, which is used for the calculation of the data under Table 10 of the related publication.
     
  • The subdirectories UHF-CC.atz.f12 under C6H6-* and C10H8-* include UHF-CCSD(F12*)(T)/aug-cc-pVTZ calculations for the transition states and the products. The subdirectories CC.atz.f12 under C6H6 and C10H8 include RHF-CCSD(F12*)(T)/aug-cc-pVTZ calculations for the reactants benzene and naphthalene. These are used to calculate the data under Table 9 in the related publication
     
  • The subdirectories rij.grid_m3.scfconv_7 under C14H10* includes the DFT calculations with m3 integration grid and RI-J approximation. Under these, the subfolders (UHF-)PNO-CC.atz.f12 include the PNO-(UHF-)CCSD(F12*)(T)/aug-cc-pVTZ calculations which are used to produce the data under Table 9 in the related publication.
     
  • The subdirectories (UHF-)PNO-CC.atz.f12 under C6H6* and C10H8* include PNO-(UHF-)CCSD(F12*)(T)/aug-cc-pVTZ calculations which are used for PNO threshold selection for the UHF-CCSD(F12*)(T) calculations (Table S2 of the Supporting Information of the related publication).

Files

Files (377.4 MB)

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md5:14a788945f5a40931ab4eda1460cd3d2
169.0 MB Download
md5:f6935e58cd8838f71a65d0b38c5a2877
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md5:af5b22a2f11a7535e611c574816a3df1
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md5:4adae1bc3793fc7c2ea3e0f088bb1901
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Additional details

Related works

Is supplement to
Journal article: 10.1021/acs.jpca.0c07133 (DOI)