Published October 22, 2020
| Version v0.21.0
Software
Open
vib-singlecell-nf/vsn-pipelines: v0.21.0
Authors/Creators
- 1. VIB-KU Leuven Center for Brain & Disease Research
- 2. @aertslab
Description
- Merge #230 Closes #228 Add DecontX
- Merge #237 Closes #229 Add SoupX
- Closes #233 3a66a0c Improve interoperability with Scanpy
- Closes #234 Merge final h5ad files when in param exploration mode
- Closes #235 Store log files in log folder
- c1cf114 Support for h5ad built with
anndata>=0.7.xfor h5ad to loom conversion - Bug fixes #227 #236
- Bug fix 0bbffbc Regressing out variables should be performed after HVG and before feature scaling
- New label for report NXF processes:
compute_resources__report - [scenic] 455a165 Allow to use --all_modules argument when running the cisTarget step
- [scanpy] 06f4a41 Fix bug cells not matching when running mnncorrect batch effect correction pipeline
Files
vib-singlecell-nf/vsn-pipelines-v0.21.0.zip
Files
(11.0 MB)
| Name | Size | Download all |
|---|---|---|
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md5:7b30f2ebf1e3f306a55e32b3ca545c4f
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11.0 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/vib-singlecell-nf/vsn-pipelines/tree/v0.21.0 (URL)