Published October 4, 2020 | Version v1
Dataset Open

sQTL catalog generated by sqtlseeker2-nf in the GTEx dataset

  • 1. Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain
  • 2. Section of Statistics, Faculty of Biology, Universitat de Barcelona (UB), Av. Diagonal 643, Barcelona 08028, Spain

Description

sQTL catalog generated by sqtlseeker2-nf in the GTEx dataset, as described in the publication Identification and analysis of splicing quantitative trait loci across multiple tissues in the human genome by Garrido-Martín et al. in Nat. Commun. (https://doi.org/10.1038/s41467-020-20578-2). It contains the results of the sqtlseeker2-nf pipeline, run using different input data: i) RSEM transcript quantifications and genotype data from GTEx V7, ii) LeafCutter intron excision ratios and genotype data from GTEx V7 and iii) RSEM transcript quantifications and genotype data from GTEx V8. For each GTEx tissue, it includes summary statistics corresponding to all the tests performed (both nominal and permutation passes) and the significant sQTLs identified.

 

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