Published September 5, 2020
| Version v1
Data from: An update and reassessment of fern and lycophyte diversity data in the Japanese Archipelago
Description
The fern and lycophyte flora of Japan comprising 721 native taxa (including subspecies and varieties) plus 371 combinations of interspecific hybrids was reassessed using a nearly comprehensively sampled distribution map at 10 km resolution vouchered by 216,687 specimens, up-to-date cytotaxonomic information covering 74 % of the taxa, and an rbcL sequence dataset covering 97.9 % of the taxa. Distribution of diversity was visualized by species richness and phylogenetic diversity. Apomixis was observed in 11.0 % of the native taxa whose reproductive modes are known. The number of sexually reproducing polyploid taxa (n = 199) is less than sexual diploids (n = 241), and 30 of them are evidently allopolyploid, in contrast with the low number of possible autopolyploids (n = 4). A morphological character dataset in Lucid format is provided for taxonomic identification of the native taxa.
Notes
ESM1. A list of native fern and lycophyte taxa (species, subspecies and varieties; 721 taxa total) in Japan accepted in this study
Taxon ID refers to that in FernGreenList ver.1.0.1 (http://www.rdplants.org/gl/). Unless otherwise noted, rbcL GenBank accession numbers are those used in Ebihara et al. (2010). Asterisks after accession numbers indicate newly generated sequences by this study. Voucher information only provided for newly generated sequences. Information on reproductive modes, ploidy levels and leaf seasonality follow those in Ebihara et al. (2016, 2017), and only records based on material collected in Japan are used. For reproductive mode, irregular meiosis is not considered, 0 = no information, 1 = sexual, 2 = apomictic and 3 = sexual + apomictic.
ESM1.csv
ESM2. A list of fern and lycophyte herbarium specimens from Japan used to generate the 10 km grid cell distribution maps in Ebihara et al. (2016, 2017)
A single specimen is cited per taxon per grid cell for all native taxa including species, subspecies, varieties, and hybrids (1090 taxa total). A small number of corrections on identification and location after publication of Ebihara et al. (2016, 2017) were applied, but new findings (e.g., new species and new records) made during the same period are not reflected. Taxon ID refers to that in FernGreenList ver. 1.0.1 (http://www.rdplants.org/gl/). Secondary grid code refers to "Basic Grid Square Codes" defined by the statistics Bureau of Japan (http://www.stat.go.jp/english/data/mesh/05.html). Grid cells at the secondary partition level (ca. 100 km2) are used, and coordinates of their center points are listed. Herbarium acronyms follow Index Herbariorum (http://sweetgum.nybg.org/science/ih/) but the following abbreviations are used for those not listed in Index Herbariorum; Gifu: Gifu Prefectural Museum; Gunma: Gunma Museum of Natural History; Iwate: Iwate Prefectural Museum; Kobe: Kobe University; Kurashiki: Kurashiki Museum of Natural History; Miyajima: Miyajima Natural Botanical Garden, Hiroshima University, Niigata: Niigata University; Sendai City Wild Plants Garden; Tochigi: Tochigi Prefectural Museum; Yamaguchi: Yamaguchi Prefectural Museum; Yokohama; Yokohama City Children's Botanical Garden; Yokosuka: Yokosuka City Museum. All the listed specimens were seen by the authors except for a part of Isoëtes specimens which are cited from Takamiya et al. (1997).
ESM2.csv
ESM3. JpFernKeys ver. 1.0: An interactive key file for identification of all the native fern and lycophyte taxa (species, subspecies and varieties) in Japan plus a few common naturalized species for the software Lucid v3.3 (free edition) available at http://www.lucidcentral.com
The data are excerpts from matrices of morphological characters included in Ebihara (2016, 2017). Measurements are based on ten fertile herbarium specimens per taxon collected in Japan which were selected randomly with a few exceptions for taxa bearing large fronds (e.g., tree ferns). For some rare taxa with less than ten specimens available, those collected outside Japan were used.
ESM3.zip