Published August 31, 2020
| Version v1.2.1
Software
Open
ComparativeGenomicsToolkit/cactus: Cactus 1.2.1 2020-08-31
Authors/Creators
- 1. UC Santa Cruz Genomics Institute
- 2. UCSC
- 3. @UCSantaCruzComputationalGenomicsLab
- 4. EMBL-EBI
- 5. Google, Inc.
- 6. Princeton University
- 7. University of Missouri
Description
Cactus 1.2.1 is available in the following forms:
- Docker Image:
quay.io/comparative-genomics-toolkit/cactus:v1.2.1GPU-accelerated Docker Image:quay.io/comparative-genomics-toolkit/cactus:v1.2.1-gpuInstall instructions in README.md - Pre-compiled Binaries Linux Tarball: cactus-bin-v1.2.1.tar.gz Install instructions in BIN-INSTALL.md
- Source Tarball: cactus-v1.2.1.tar.gz Install instructions in README.md
WARNING: do not use the github automatically generated source files (Source code (zip) or Source code (tar.gz)), these are not correct.
Please subscribe to the cactus-announce low-volume mailing list to receive notice of Cactus release.
Release notesThis release fixes bugs related to GPU lastz
- Cactus fixed to correctly handle GPU lastz repeatmasking output, as well to keep temporary files inside Toil's working directory.
cactus-prepare --wdlupdated to support--preprocessorBatchSize > 1cactus_covered_intervalsbug fix and speedup- GPU lastz updated to fix crash
GPU Lastz version used in GPU-enabled Docker image: 12af3c295da7e1ca87e01186ddf5b0088cb29685 hal2vg version included: v1.0.0
Files
ComparativeGenomicsToolkit/cactus-v1.2.1.zip
Files
(1.1 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:a7f7eb37a798222c47ad0625c7161760
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1.1 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/ComparativeGenomicsToolkit/cactus/tree/v1.2.1 (URL)