Published July 15, 2026
| Version 4.2.5
Software
Open
biobakery/MetaPhlAn: 4.2.5
Authors/Creators
- duytintruong
- abmiguez
- Nicola Segata
- Francesco Asnicar1
- Claudia Mengoni
- Francesco Beghini
- Michal Punčochář
- ljmciver
- Afrah Shafquat
- Moreno Zolfo2
- Vitor Heidrich
- Sagun Maharjan3
- schwager-hsph
- John Rambython
- Linda
- Alex Hübner
- gabuali
- ProsperP
- sarah872
- Bérénice Batut
- Eric Deveaud4
- Francisco Plaza
- Matthias Scholz5
- Paweł Konieczny
- Robert Stewart
- shichang xie
- 1. University of Trento
- 2. Okinawa Institute of Science and Technology
- 3. HSPH
- 4. Institut Pasteur
- 5. Edmund Mach Foundation
Description
Version 4.2.5 (Jul 13th, 2026)
Fixes
- [MetaPhlAn] Fix: formatting bug when unclassified estimation is used 26f2b8a
- [MetaPhlAn] Fix: removal of fasta file after downloading f967cb9
- [MetaPhlAn] Fix: update of rbiom function in
calculate_diversity.Rb388de5 - [MetaPhlAn] Fix: parameter check when neither
--mapoutnor--no_mapare provided 95a80f2
Improvements
- [StrainPhlAn] Optimize: print clades for large sample size bb17299
- [StrainPhlAn] Add:
--sample_listallow to input file with list of paths bb17299 - [StrainPhlAn] Add:
--references_listallow to input file with list of paths d3b4669 - [MetaPhlAn] Optimize:
sgb_to_gtdb.pyis more robust and can now take as input merged profiles using the flag--merged_profiles. Automatic detection of the correct gtdb conversion file and possibility to provide it as input with--gtdb_assignment_file82131d1 and 558cd9
Files
biobakery/MetaPhlAn-4.2.5.zip
Files
(6.1 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:1282c2f1930b9af53aefd03598b5d9e2
|
6.1 MB | Preview Download |
Additional details
Related works
- Is supplement to
- Software: https://github.com/biobakery/MetaPhlAn/tree/4.2.5 (URL)
Software
- Repository URL
- https://github.com/biobakery/MetaPhlAn