Published August 21, 2020
| Version v1.2.0
Software
Open
ComparativeGenomicsToolkit/cactus: Cactus 2020-08-21
Authors/Creators
- 1. UC Santa Cruz Genomics Institute
- 2. UCSC
- 3. @UCSantaCruzComputationalGenomicsLab
- 4. EMBL-EBI
- 5. Google, Inc.
- 6. Princeton University
- 7. University of Missouri
Description
Cactus 1.2.0 is available in the following forms:
- Docker Image:
quay.io/comparative-genomics-toolkit/cactus:v1.2.0GPU-accelerated Docker Image:quay.io/comparative-genomics-toolkit/cactus:v1.2.0-gpuInstall instructions in README.md - Pre-compiled Binaries Linux Tarball: cactus-bin-v1.2.0.tar.gz Install instructions in BIN-INSTALL.md
- Source Tarball: cactus-v1.2.0.tar.gz Install instructions in README.md
WARNING: do not use the github automatically generated source files (Source code (zip) or Source code (tar.gz)), these are not correct.
Please subscribe to the cactus-announce low-volume mailing list to receive notice of Cactus release.
Release notesThis release adds GPU lastz repeatmasking support in the preprocessor, and includes hal2vg
Notable Changes:
- GPU lastz repeat masking is about an order of magnitude faster than CPU masking, and should provide better results. It's toggled on in the config file or by using the GPU-enabled Docker image.
- hal2vg (pangenome graph export) now included in the Cactus binary release and docker images.
- update hal to f8f3fa2dada4751b642f0089b2bf30769967e68a
GPU Lastz version used in GPU-enabled Docker image: f84a94663bbd6c42543f63b50c5843b0b5025dda hal2vg version included: v1.0.0
Files
ComparativeGenomicsToolkit/cactus-v1.2.0.zip
Files
(1.1 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:83ea1e84f5064beb929266090d9c3b82
|
1.1 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/ComparativeGenomicsToolkit/cactus/tree/v1.2.0 (URL)