Published June 21, 2026 | Version v1.3.0
Software Open

zqfang/GSEApy: gseapy-v1.3.0

Authors/Creators

  • 1. Stanford
  • 2. RWTH Aachen University
  • 3. Lamin
  • 4. BITS PILANI | @SforAiDL
  • 5. The Francis Crick Insitute
  • 6. @newlimit
  • 7. Singapore Power Digital

Description

Highlight

  • fgsea multilevel p-value method exported to the Python API & CLI: prerank(..., method='multilevel', sample_size=101, eps=1e-50) and gseapy prerank --method multilevel --sample-size 101 --eps 1e-50. A faithful Rust port of fgsea's multilevel algorithm that resolves p-values far below 1/permutation_num; NES is fgsea-style (ES / mean(|same-sign null ES|)).

What's Changed

  • Add fgsea multilevel p-value backend (method='multilevel') by @zqfang in https://github.com/zqfang/GSEApy/pull/357
  • Add tests for wrap_width parameter in DotPlot/dotplot/barh by @zqfang with @Copilot in https://github.com/zqfang/GSEApy/pull/359

Full Changelog: https://github.com/zqfang/GSEApy/compare/v1.2.1...v1.3.0

Files

zqfang/GSEApy-v1.3.0.zip

Files (61.2 MB)

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Additional details

Related works

Is supplement to
Software: https://github.com/zqfang/GSEApy/tree/v1.3.0 (URL)

Software

Repository URL
https://github.com/zqfang/GSEApy