Published August 4, 2020
| Version v1.0.0
Software
Open
npy2bdv: writing numpy arrays to Fiji/BigDataViewer HDF5 files
Description
Bridging library between Python and HDF5 file format used in Fiji/BigDataViewer/BigStitcher community.
Writes image stacks (numpy 3d-arrays) into HDF5 files with rich meta-information saved in an accompanying XML file. Also supports basic reading from HDF5 into numpy arrays.
Default options are optimized for high-speed writing in custom microscopes, e.g. streaming images at full camera speed.
Files
nvladimus/npy2bdv-v1.0.0.zip
Files
(24.5 kB)
| Name | Size | Download all |
|---|---|---|
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md5:21a5705503ea3ced5e80abb5f96616d5
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Additional details
Related works
- Is supplement to
- https://github.com/nvladimus/npy2bdv/tree/v1.0.0 (URL)