Published July 31, 2020
| Version v1.1.1
Software
Open
ComparativeGenomicsToolkit/cactus: Cactus 1.1.1 2020-07-31
Authors/Creators
- 1. UC Santa Cruz Genomics Institute
- 2. UCSC
- 3. @UCSantaCruzComputationalGenomicsLab
- 4. EMBL-EBI
- 5. Google, Inc.
- 6. Princeton University
- 7. University of Missouri
Description
Cactus 1.1.1 is available in the following forms:
- Docker Image:
quay.io/comparative-genomics-toolkit/cactus:v1.1.1GPU-accelerated Docker Image:quay.io/comparative-genomics-toolkit/cactus:v1.1.1-gpuInstall instructions in README.md - Pre-compiled Binaries Linux Tarball: cactus-bin-v1.1.1.tar.gz Install instructions in BIN-INSTALL.md
- Source Tarball: cactus-v1.1.1.tar.gz Install instructions in README.md
WARNING: do not use the github automatically generated source files (Source code (zip) or Source code (tar.gz)), these are not correct.
Please subscribe to the cactus-announce low-volume mailing list to receive notice of Cactus release.
Release notesThis release fixes how Kent tools required for hal2assemblyHub.py were packaged in 1.1.0 (thanks @nathanweeks).
Notable Changes:
- The required shared libaries to run the Kent tools are added to the Docker Image
- The same Kent tools are removed from the binary release. They were included under the assumption that they were statically built and fully standalone, but they are not. Instead, instrucitons are provided to guide interested users to installing them on their own.
GPU Lastz version used in GPU-enabled Docker image: 3e14c3b8ceeb139b3b929b5993d96d8e5d3ef9fa
Files
ComparativeGenomicsToolkit/cactus-v1.1.1.zip
Files
(1.1 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:2d3e6637fc59763b276b9716c4f44bc8
|
1.1 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/ComparativeGenomicsToolkit/cactus/tree/v1.1.1 (URL)