Published July 30, 2020
| Version v1.1.0
Software
Open
ComparativeGenomicsToolkit/cactus: Cactus 1.1.0 2020-07-30
Authors/Creators
- 1. UC Santa Cruz Genomics Institute
- 2. UCSC
- 3. @UCSantaCruzComputationalGenomicsLab
- 4. EMBL-EBI
- 5. Google, Inc.
- 6. Princeton University
- 7. University of Missouri
Description
Cactus 1.1.0 is available in the following forms:
- Docker Image:
quay.io/comparative-genomics-toolkit/cactus:v1.1.0GPU-accelerated Docker Image:quay.io/comparative-genomics-toolkit/cactus:v1.1.0-gpuInstall instructions in README.md - Pre-compiled Binaries Linux Tarball: cactus-bin-v1.1.0.tar.gz Install instructions in BIN-INSTALL.md
- Source Tarball: cactus-v1.1.0.tar.gz Install instructions in README.md
WARNING: do not use the github automatically generated source files (Source code (zip) or Source code (tar.gz)), these are not correct.
Please subscribe to the cactus-announce low-volume mailing list to receive notice of Cactus release.
Release notesThis release contains some important bug fixes, as well as major improvements to cactus-prepare functionality.
Notable Changes:
cactus-prepareimprovements including:- WDL / Terra support
- GPU lastz support
- bug fixes
- Upgrade to Toil 4.1.0
- Fix bug causing
cactus-referenceto run forever in presence of 0-length branches - Major speed improvement for
cactus-cafby fixing secondary alignment filter. - Include HAL python tools in Docker images and binary release
- Fix static binary for
cPecanRealign - Provide GPU-enabled Docker image for release
- Included HAL tools contains several crash fixes
GPU Lastz version used in GPU-enabled Docker image: 3e14c3b8ceeb139b3b929b5993d96d8e5d3ef9fa
Files
ComparativeGenomicsToolkit/cactus-v1.1.0.zip
Files
(1.1 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:5de6368ba33df11419018a43e0cd53ba
|
1.1 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/ComparativeGenomicsToolkit/cactus/tree/v1.1.0 (URL)