RNA-seq data from leaf trichomes, stem trichomes, bald stems and leaf primordiums from different tomato genetic backgrounds
Authors/Creators
- 1. University of Amsterdam, SILS
Description
# Description
Various tissues of cultivated and wild tomato genotypes were harvested.
# RNA isolation protocol
Total RNA was isolated before messenger and small RNA were separated.
# RNA sequencing protocol
Illumina NextSeq550
# Samples
| tube | accession | tissue | sample | weight (mg) | Small RNA | Messenger RNA |
|------|------------|------------------|--------|-------------|------------|----------------|
| SQ1 | PI127826 | trichomes | 1 | 49 | 1 | 0 |
| SQ2 | PI127826 | trichomes | 2 | 47,1 | 1 | 0 |
| SQ3 | PI127826 | trichomes | 3 | 45,2 | 1 | 0 |
| SQ4 | Moneymaker | trichomes | 4 | 47,9 | 1 | 0 |
| SQ5 | Moneymaker | trichomes | 5 | 48,9 | 1 | 0 |
| SQ6 | Moneymaker | trichomes | 6 | 47,2 | 1 | 0 |
| SQ7 | Lyc4 | trichomes | 1 | 27,7 | 1 | 0 |
| SQ8 | Lyc4 | trichomes | 2 | 26,5 | 1 | 0 |
| SQ9 | PIK3 | trichomes | 3 | 50 | 1 | 1 |
| SQ10 | LA4024 | trichomes | 1 | 45,5 | 1 | 0 |
| SQ11 | LA4024 | trichomes | 2 | 49,5 | 1 | 0 |
| SQ12 | LA4024 | trichomes | 3 | 49,9 | 1 | 0 |
| SQ13 | LA1777 | trichomes | 1 | 50 | 1 | 0 |
| SQ14 | LA1777 | trichomes | 2 | 48,9 | 1 | 0 |
| SQ15 | LA1777 | trichomes | 3 | 47,9 | 1 | 0 |
| SQ16 | MicroTom | trichomes | 1 | 43,1 | 1 | 1 |
| SQ17 | MicroTom | trichomes | 2 | 43,6 | 1 | 1 |
| SQ18 | MicroTom | trichomes | 3 | 45,1 | 1 | 1 |
| SQ19 | LA0716 | trichomes | 1 | 43 | 1 | 0 |
| SQ20 | LA0716 | trichomes | 2 | 46,1 | 1 | 0 |
| SQ21 | LA0716 | trichomes | 3 | 49,5 | 1 | 0 |
| SQ22 | Myc-1 | trichomes | 1 | 46 | 1 | 1 |
| SQ23 | Myc-1 | trichomes | 2 | 37,5 | 1 | 1 |
| SQ24 | Myc-1 | trichomes | 3 | 42,5 | 1 | 1 |
| SQ25 | Lyc4 | trichomes | 4 | 26,5 | 1 | 0 |
| SQ26 | Myc-1 | leaf | 1 | 45 | 1 | 1 |
| SQ27 | Myc-1 | bald stem | 1 | 45 | 1 | 1 |
| SQ28 | Moneymaker | leaf primordium | 1 | 8,4 | 1 | 1 |
| SQ29 | PI127826 | leaf primordium | 1 | 12,8 | 1 | 1 |
| SQ30 | LA0716 | leaf primordium | 1 | 9,1 | 1 | 1 |
| SQ31 | moneymaker | bald stem | 4 | 45 | 1 | 1 |
| SQ32 | moneymaker | bald stem | 5 | 45 | 1 | 1 |
| SQ33 | moneymaker | bald stem | 6 | 45 | 1 | 1 |
| SQ34 | PI127826 | bald stem | 1 | 45 | 1 | 1 |
| SQ35 | PI127826 | bald stem | 2 | 45 | 1 | 1 |
| SQ36 | PI127826 | bald stem | 3 | 45 | 1 | 1 |
| SQ37 | LA0716 | bald stem | 1 | 45 | 1 | 1 |
| SQ38 | LA0716 | bald stem | 2 | 45 | 1 | 1 |
| SQ39 | LA0716 | bald stem | 3 | 45 | 1 | 1 |
| SQ40 | moneymaker | leaf | 1 | 45 | 1 | 1 |
| SQ41 | moneymaker | leaf | 1+2 | 45 | 1 | 1 |
| SQ42 | moneymaker | leaf | 2 | 45 | 1 | 1 |
| SQ43 | PI127826 | leaf | 1 | 45 | 1 | 1 |
| SQ44 | PI127826 | leaf | 2 | 45 | 1 | 1 |
| SQ45 | PI127826 | leaf | 3 | 45 | 1 | 1 |
| SQ46 | LA0716 | leaf | 1 | 45 | 1 | 1 |
| SQ47 | LA0716 | leaf | 2 | 45 | 1 | 1 |
| SQ48 | LA0716 | leaf | 3 | 45 | 1 | 1 |
| SQ49 | PIK1 | Trichomes | 1 | 25 | 1 | 1 |
| SQ50 | PIK2 | Trichomes | 2 | 45 | 1 | 1 |
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