Published July 17, 2020 | Version v1.0
Dataset Open

Dataset for CHISEL complete demo on chromosome 6

Authors/Creators

  • 1. Princeton University

Description

This dataset contains all the files required for the complete demo of CHISEL on chromosome 6. Specifically, the files included here are:

  1. `cells.bam` barcoded BAM file (using flag `CB:Z:[A,C,G,T]+`) for 100 tumor single cells;
  2. `cells.bam.bai` index of the barcoded BAM file;
  3. `normal.bam` matched-normal BAM file for the 100 tumor single cells;
  4. `normal.bam.bai` index of the matched-normal BAM file.
  5. 'phases.tsv' tab-separated dataframe with phases of germline SNPs, with fields `CHROMOSOME  POS  PHASE`

Files

Files (6.7 GB)

Name Size Download all
md5:002b2c17a583c531851db96039c079eb
4.9 GB Download
md5:4aa43a252a567fa1f80b801656b23576
504.9 kB Download
md5:5dade03177e1f2dc2970e91e7a541582
1.8 GB Download
md5:72f90f2e3725bed0afb6c3025dca061b
2.1 MB Download
md5:d05638ce88f0053329b34b15285f1a18
1.8 MB Download

Additional details

Related works

Is supplement to
Software: https://github.com/raphael-group/chisel (URL)