Published July 17, 2020
| Version v1.0
Dataset
Open
Dataset for CHISEL complete demo on chromosome 6
Description
This dataset contains all the files required for the complete demo of CHISEL on chromosome 6. Specifically, the files included here are:
- `cells.bam` barcoded BAM file (using flag `CB:Z:[A,C,G,T]+`) for 100 tumor single cells;
- `cells.bam.bai` index of the barcoded BAM file;
- `normal.bam` matched-normal BAM file for the 100 tumor single cells;
- `normal.bam.bai` index of the matched-normal BAM file.
- 'phases.tsv' tab-separated dataframe with phases of germline SNPs, with fields `CHROMOSOME POS PHASE`
Files
Files
(6.7 GB)
Additional details
Related works
- Is supplement to
- Software: https://github.com/raphael-group/chisel (URL)