Besca example data repository

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Published July 8, 2020 | Version 1.0
Dataset Open

Haber2017 (GSE92332) mouse intestine dataset for Besca

Authors/Creators

  • 1. Roche Pharma Research and Early Development

Description

Here we used Besca to reprocessed the mouse small intestine single cell transcriptomics dataset GSE92332 downloaded from GEO. It was originally published by [Haber et al. Nature. 2017] and also used in the best practices paper by [Luecken & Theis. Mol Syst Biol. 2019].

Files

Files (448.1 MB)

Name Size
md5:928de3612ee845feac5b5f3bdb21958d
267.4 MB Download
md5:6e8d8a4184a7a046bb72291ef8cd82b6
180.8 MB Download

Additional details

References

  • Haber AL, Biton M, Rogel N, et al. A single-cell survey of the small intestinal epithelium. Nature. 2017;551(7680):333-339. doi:10.1038/nature24489
  • La Manno G, Soldatov R, Zeisel A, et al. RNA velocity of single cells. Nature. 2018;560(7719):494-498. doi:10.1038/s41586-018-0414-6
  • Luecken MD, Theis FJ. Current best practices in single-cell RNA-seq analysis: a tutorial. Mol Syst Biol. 2019;15(6):e8746. Published 2019 Jun 19. doi:10.15252/msb.20188746