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Published July 7, 2020 | Version v0.3.2
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meyer-lab-cshl/plinkQC: plinkQC 0.3.2

Authors/Creators

Description

plinkQC 0.3.2 minor changes
  • Add checks and tests in evaluate_check_ancestry for missing non-reference samples 5c03971
  • Clarified tutorials:
    • R internal file.copy instead of systems cp command to make run on windows: 6c91ef3, fixes #26
    • Add additional filter for A->T, C->G variants as suggested in #24; 11e0375

  • Fixed plotting issues in PCA plot of ancestry check:

    • allow for supplying names of European reference population ae09e64
    • provide argument to specify number of populations per legend row c7fe85d
    • Ensure correct ordering of population colors when reference population is not HapMap 86275b7

  • Fixed dead links in vignettes (caused by migration of repository): da987d8

  • Added note about chrY in Hapmap data (vignette): e8afbb9
  • Added note about recommended use of plink1.9 (vs 2.0): b69d3d7

Files

meyer-lab-cshl/plinkQC-v0.3.2.zip

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Additional details

Related works

Is supplement to
https://github.com/meyer-lab-cshl/plinkQC/tree/v0.3.2 (URL)