Published June 23, 2020 | Version Part1
Dataset Open

MR Spectra from rat hippocampus with LCModel quantification and the corresponding basis set

Creators

  • 1. LIFMET, EPF; CIBM, EPFL
  • 2. CIBM, EPFL

Contributors

  • 1. CIBM MRI EPFL

Description

This folder contains the LCModel quantifications of spectra acquired in hippocampus from 7 rats. The spectra were quntified using six different DKNTMN (spline stiffness) values (0.1, 0.25, 0.4, 0.5, 1, 5). In the folder Control_files_Basis_set you can find all the control files used in this quantification along with the corresponding basis set (metabolites/simulated using NMRScopeB from jMRUI and in vivo parameters + full MM spectrum).

Please cite the following manuscript if you are using the data

In vivo macromolecule signals in rat brain 1 H-MR spectra at 9.4T: Parametrization, spline baseline estimation, and T2 relaxation times - PubMed (nih.gov)
 

Files

Files (52.9 MB)

Name Size Download all
md5:a7bbd34bf1afa126e0edef584985ccd2
52.9 MB Download

Additional details

Funding

Translational Non-Invasive Metabolic Studies towards Novel Treatments of Chronic Hepatic Encephalopathy in Developing Brain, from 3D Organotypic Brain Cell Cultures to the In vivo Rat and Human Brain 310030_173222
Swiss National Science Foundation

References

  • Magn Reson Med . 2021 Nov;86(5):2384-2401. doi: 10.1002/mrm.28910.