Published June 5, 2020
| Version v0.11.1
Software
Open
ICB-DCM/AMICI: AMICI v0.11.1
Authors/Creators
- 1. @ICB-DCM @ICBmunich
- 2. Helmholtz Center Munich, TUM
- 3. IRU Biomathematics @ Uni Bonn
- 4. @gitlabhq
Description
Python
- Upgrade to sympy 1.6.0, which is now required minimum version (#1098, #1103)
- Speed up model import
- Speed-up computation of sx0, reduce file size (#1109)
- Replace terribly slow sympy.MutableDenseMatrix.is_zero_matrix by custom implementation (#1104)
- speedup dataframe creation in
get*AsDataFrame(#1088) - Allow caching edatas for simulate_petab (#1106)
- Fix wrong deprecation warning (Fixes #1093)
- Fix segmentation faults in NewtonSolver under certain conditions (#1089, #1090, #1097)
- fix wrong power function call in
unscale_parameter(#1094) - Fix MathML conversion (#1086)
- Fix deepcopy of SymPy objects (#1091)
- handle empty rdata->{pre|post}eq_numlinsteps (Closes #1113), which previously made the matlab interface unusable
- Fix generation of compileMexFile.m for matlab compilation of python code (#1115)
- Reduce memory requirements and speedup compilation of large models (#1105)
- Place generated code into own namespace (#937) (#1112)
- Fix several msvc compiler warnings (#1116) (Note that MSVC support is still experimental) breaking change for users of C++ interface
- Fix swig warning: ensure base class ContextManager is known before use (Fixes #1092) (#1101)
- Don't install/run valgrind on travis CI (done with github actions… (#1111)
Files
ICB-DCM/AMICI-v0.11.1.zip
Files
(8.3 MB)
| Name | Size | Download all |
|---|---|---|
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md5:334a6998c20c85e8b8af323dd60a14e6
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Additional details
Related works
- Is supplement to
- https://github.com/ICB-DCM/AMICI/tree/v0.11.1 (URL)