layerfMRI/LAYNII: LAYNII v1.5.6

Published May 26, 2020 | Version v1.5.6

Software Open

Improvements

All programs now can handle absolute and relative input paths and save outputs in the input folder.
Input data type casts are tightened for all programs. This addresses many issues stemming from various integer data types (int8, int16, int32 etc.)
NaNs in input images are swapped with zeros. Addressing many issues coming from NaN voxels.
Lots of under the hood improvements and restructuring laying the groundwork for future additions.
[1.5.1] Introducing custom output path in LN_BOCO, LN_MP2RAGE_DNOISE, LN_FLOAT_ME, LN_SHORT_ME, LN_INT_ME. This flag will also be added to other programs as needed in the future.
[1.5.1] Fixing minor bugs introduced in 1.5.0 after restructuring.
[1.5.2] Added support for .nii.gz read/write.
[1.5.3] Fix displayed version number in welcome message.
[1.5.4] Add rim_M.nii as a synthetic 2D test image.
[1.5.5] Add equi-distant and equi-volume metrics as additional default outputs to LN2_LAYERS.
[1.5.6] Outputs are now changed to use suffix tags instead of prefix in ALL programs.
[1.5.6] Nii.gz bug fix for windows
[1.5.6] The testing files and scripts are updated to match the new options after v1.5
[1.5.6] LN_GRADSMOOTH_ITER is added to avoid signal smoothing across kissing gyri.
[1.5.6] binaries are added

New features

Introducing LN2_LAYERS program. This program implements a vastly faster equidistant layering algorithm suitable for generating layers in very large images. Also comes with middle gray matter, thickness and approximate curvature outputs.
New programs with LN2 prefix are mostly experimental. Therefore, use these programs by knowing that they might be subject to extensive changes until LAYNII v2.0.0.

Files

Name	Size	Download all
layerfMRI/LAYNII-v1.5.6.zip md5:5edd08de22007405fdbe0421c4859029	80.1 MB	Preview Download