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Published May 24, 2020 | Version v0.8
Software Open

reneshbedre/bioinfokit: Bioinformatics data analysis and visualization toolkit

Creators

  • 1. Texas A&M AgriLife Research

Description

v0.8 has the following updates and changes

  • GFF3 to GTF file conversion utility added and updated under class gff
  • In Manhatten plot (visuz.marker.mhat), the labeling issue with markernames parameter corrected (see issue # 4 on GitHub for details;)
  • gstyle parameter added in Manhatten plot for box style annotation
  • splitvcf function added for splitting VCF file into individual VCF files for each chromosome
  • mergevcf moved to analys.marker class
  • reg_lin function updated for multiple regression
  • degree of freedom fixed for t-test for regression coefficients
  • VIF calculation for MLR updated
  • functions fastq_reader and fqreadcounter moved to fastq class

Files

reneshbedre/bioinfokit-v0.8.zip

Files (35.7 kB)

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