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Published March 10, 2017 | Version v0.6.8
Software Open

Neurosim-lab/netpyne: v0.6.8

  • 1. University College London
  • 2. The Kerr Lab
  • 3. University of Florida
  • 4. @Neurosim-lab
  • 5. UCD Neuromuscular Systems and Neural Engineering Lab
  • 6. UCL

Description

Version 0.6.8
  • Keep track of last host after distributing cells of each pop (improves load balance) (issues #41 #196)

  • Added option to run batch on HPC SLURM system (eg. SDSC Comet)

  • Added cvode_atol option to cfg

  • Improved plotShape() to use matplotlib and use colormap to show num syns

  • Batch params can now have an arbitrary number of levels in structure (eg. dict of list of dicts etc)

  • Batch params can now be grouped ('group':True) so values vary together not combinatorally

  • Removed pc.done() at the end of Batch.run() method so can run multiple batches from same script

  • Added skipCfg option to batch

  • Added cfg.saveCellSecs option to reduce save time and file size (secs available via netParams)

  • Added cfg.saveCellConns option to reduce save time and file size

  • Modified code so 'cellModel' tag is optional

  • Added renameCellParamsSec() method to netParams class

  • When importing cell global 'v_init' is stored as param for each section

  • Fixed small bugs when loading saved model

  • Fixed bug when calling internal method _findPrePostCellsCondition()

  • Fixed bug in subcellConn groupedSynMechs

  • Fixed bug in subcellConn trying to add stims+conns to NetStims/VecStims

  • Fixed bug in subcellConn so syns are not placed at loc 0.0 or 1.0 (error if syn uses ion)

Files

Neurosim-lab/netpyne-v0.6.8.zip

Files (8.9 MB)

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