Exoplanets: Correlated Noise and Cautionary Tales. Chapter 5: A Reanalysis of Spitzer GJ 436b Emission

This reproducible-research compendium contains all files and commands
necessary to reproduce the atmospheric results of Chapter 5 of Ryan
Challener's dissertation entitled

"Exoplanets: Correlated Noise and Cautionary Tales"

The review process for the publication of this chapter may
require revisions, so please be sure that you find the compendium
associated with the paper, rather than the dissertation, if the paper
has been published.

This repository makes use of the Bayesian Atmospheric Radiative
Transfer code (BART, https://github.com/exosports/BART), and was created
in accordance with BART's license.

All commands necessary to produce the output are in compendium.sh.
File paths have been left as they are on my machine, so as to not change
any configuration files. The user may change the paths if they desire,
but they must make the corresponding changes in the configuration files.

All outputs used in the paper can be found in the output directory,
which is subdivided according to the inputs.  

The lightcurves directory contains FITS files and InfraRed Science
Archive (IRSA) tables with photometry, centering, and modeling
information for all observations, as well as diagnostic plots
from the light-curve modeling.

The scripts directory contains scripts used to process the
BART outputs to make the plots used in the paper. The
thermochemical-equilibrium atmospheres used for comparison
are found in the inputs directory.