Published March 29, 2020 | Version v4
Software Open

Code used in article "Detecting corticospinal tract impairment in tumor patients with fiber density and tensor-based metrics".

  • 1. Charité – Universitätsmedizin Berlin
  • 2. Aalto University School of Science
  • 3. Freie Universität Berlin


Here we publish the code used in our "Detecting corticospinal tract impairment in tumor patients with fiber density and tensor-based metrics" article.

The code for MRtrix3 is based on version 3.0_RC3_latest-66-g323bc8ac 64 bit release version, built Dec 11 2019 (

The code for R is based on RStudio Version 1.2.5019, with R version 3.6.1 (2019-07-05) -- "Action of the Toes", Copyright (C) 2019. The R Foundation for Statistical Computing. Platform: x86_64-apple-darwin15.6.0 (64-bit).



The authors acknowledge the support of the Cluster of Excellence Matters of Activity. Image Space Material funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany´s Excellence Strategy – EXC 2025.


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Related works

Software documentation: (URL)
Journal article: 10.1016/j.neuroimage.2019.116137 (DOI)