Published April 5, 2020
| Version v1.2.2
Software
Open
bcbio/bcbio-nextgen: v.1.2.2
Authors/Creators
- Brad Chapman1
- Rory Kirchner2
- Lorena Pantano2
- Matthias De Smet3
- Luca Beltrame
- Tetiana Khotiainsteva
- Sergey Naumenko
- Vlad Saveliev4
- Roman Valls Guimera5
- Ilya Sytchev
- John Kern
- Christian Brueffer6
- Guillermo Carrasco7
- Mario Giovacchini8
- Paul Tang9
- Miika Ahdesmaki10
- Sehrish Kanwal11
- James J Porter12
- Steffen Möller13
- Vang Le14
- Alexandru Coman15
- Valentine Svensson16
- bogdang989
- Meeta Mistry17
- Matt Edwards
- Jeff Hammerbacher18
- Brent Pedersen19
- Peter Cock
- apastore
- Stephen Turner20
- 1. Ginkgo Bioworks
- 2. Harvard Chan School of Public Health
- 3. @CenterForMedicalGeneticsGhent
- 4. @UMCCR
- 5. University of Melbourne
- 6. Lund University Cancer Center
- 7. @iZettle
- 8. Science for Life Laboratory
- 9. startup
- 10. AstraZeneca
- 11. The University of Melbourne
- 12. Recurse Center
- 13. University of Rostock
- 14. Aalborg University
- 15. @tss-yonder
- 16. FL60 Inc
- 17. HSPH
- 18. @hammerlab
- 19. University of Utah
- 20. University of Virginia
Description
- Fix for not properly looking up R environment variables in the base environment.
- Remove --use-new-qual-calculator which was eliminated in GATK 4.1.5.0.
- Ensure header is not written for a Series. In pandas 0.24.0 the default for header was changed from False to True so we have to set it explictly now.
- Remove unused Dockerfile. Thanks to @matthdsm.
- ATAC-seq: Skip peak-calling on fractions with < 1000 reads.
Files
bcbio/bcbio-nextgen-v1.2.2.zip
Files
(17.8 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:d6674b8af52ac572acec7ab863b4ce72
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17.8 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/bcbio/bcbio-nextgen/tree/v1.2.2 (URL)