Institute of Computational Biology @ Helmholtz Center Munich

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Published April 1, 2020 | Version 1
Software Open

Supplementary code to Schmiester et al. *PEtab — Interoperable Specification of Parameter Estimation Problems in Systems Biology*

Authors/Creators

  • 1. Institute of Computational Biology, Helmholtz Zentrum München -- German Research Center for Environmental Health, 85764 Neuherberg, Germany
  • 2. BioQUANT/COS, Heidelberg University, 69120 Heidelberg, Germany
  • 3. Department of Applied Mathematics II, University of Vigo, Vigo 36310, Galicia, Spain
  • 4. Faculty of Mathematics and Natural Sciences, University of Bonn, 53113 Bonn, Germany
  • 5. Faculty of Medicine and Medical Center, Institute of Medical Biometry and Statistics, University of Freiburg, 79104 Freiburg, Germany
  • 6. Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA
  • 7. FDM - Freiburg Center for Data Analysis and Modeling, University of Freiburg, 79104 Freiburg, Germany
  • 8. BioProcess Engineering Group, IIM-CSIC, Vigo 36208, Galicia, Spain

Description

This archive contains supplementary code for the manuscript PEtab — Interoperable Specification of Parameter Estimation Problems in Systems Biology by Schmiester, Schälte et al.. It contains a snapshot of the PEtab repositories as well as the parameter estimation tools currently supporting the format.

Each repository or tool is contained in a subfolder. In addition, there is a README.md file with further information, a list of the supporting tools and PEtab related repositories, and links to the respective websites. Further, a file download.sh is provided for easy download of the latest state of the tools.

Files

Files (469.8 MB)

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md5:9ca1f294c8557afb118c4c471c707788
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