Published April 1, 2020
| Version 1
Software
Open
Supplementary code to Schmiester et al. *PEtab — Interoperable Specification of Parameter Estimation Problems in Systems Biology*
Authors/Creators
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Schmiester, Leonard1
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Schälte, Yannik1
- Bergmann, Frank T.2
- Camba, Tacio3
- Dudkin, Erika4
- Egert, Janine5
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Fröhlich, Fabian6
- Fuhrmann, Lara4
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Hauber, Adrian L.7
- Kemmer, Svenja7
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Lakrisenko, Polina1
- Loos, Carolin1
- Merkt, Simon4
- Pathirana, Dilan4
- Raimúndez, Elba4
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Refisch, Lukas5
- Rosenblatt, Marcus7
- Wieland, Franz-Georg7
- Stapor, Paul L.1
- Städter, Philipp1
- Wang, Dantong1
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Banga, Julio R.8
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Timmer, Jens7
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Villaverde, Alejandro F.8
- Sahle, Sven2
- Kreutz, Clemens5
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Hasenauer, Jan4
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Weindl, Daniel1
- 1. Institute of Computational Biology, Helmholtz Zentrum München -- German Research Center for Environmental Health, 85764 Neuherberg, Germany
- 2. BioQUANT/COS, Heidelberg University, 69120 Heidelberg, Germany
- 3. Department of Applied Mathematics II, University of Vigo, Vigo 36310, Galicia, Spain
- 4. Faculty of Mathematics and Natural Sciences, University of Bonn, 53113 Bonn, Germany
- 5. Faculty of Medicine and Medical Center, Institute of Medical Biometry and Statistics, University of Freiburg, 79104 Freiburg, Germany
- 6. Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA
- 7. FDM - Freiburg Center for Data Analysis and Modeling, University of Freiburg, 79104 Freiburg, Germany
- 8. BioProcess Engineering Group, IIM-CSIC, Vigo 36208, Galicia, Spain
Description
This archive contains supplementary code for the manuscript PEtab — Interoperable Specification of Parameter Estimation Problems in Systems Biology by Schmiester, Schälte et al.. It contains a snapshot of the PEtab repositories as well as the parameter estimation tools currently supporting the format.
Each repository or tool is contained in a subfolder. In addition, there is a README.md file with further information, a list of the supporting tools and PEtab related repositories, and links to the respective websites. Further, a file download.sh is provided for easy download of the latest state of the tools.
Files
Files
(469.8 MB)
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md5:9ca1f294c8557afb118c4c471c707788
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469.8 MB | Download |