Published March 12, 2020 | Version 1.0.0
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Test data for running snakePipes : WGBS workflow

  • 1. MPI-IE

Description

Test files for running snakePipes workflows

snakePipes are pipelines built using snakemake and python for the analysis of epigenomic datasets. Please refer to this link for further information on snakePipes.

This folder contains test files that can be used to run the WGBS workflow under snakePipes. To test the workflow, follow the following steps : 

  • Download or prepare genome fasta, indices and annotations for the mouse (GRCm38) genome.
  • Download and install snakePipes via `conda create -n snakePipes -c mpi-ie -c bioconda -c conda-forge snakePipes`
  • Update Genome configuration file with path to indices and annotations.
  • Move to this repository and run the example command.sh

Files

Files (151.3 MB)

Name Size Download all
md5:50b48e2d789c08af297c623941132561
138 Bytes Download
md5:f339cd89a3f1436ccd69f583706f8a9e
121 Bytes Download
md5:376fd2ec841e4babe50dd1074f05a352
151.3 MB Download