Published March 12, 2020 | Version 1.0.0
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Test data for running snakePipes : ATAC-seq workflow

  • 1. MPI-IE

Description

Test files for running snakePipes workflows

snakePipes are pipelines built using snakemake and python for the analysis of epigenomic datasets. Please refer to this link for further information on snakePipes.

This folder contains test files that can be used to run the ATAC-seq workflow under snakePipes. To test the workflow, follow the following steps : 

  • Download or prepare genome fasta, indices and annotations for fruit fly (dm6) genome.
  • Download and install snakePipes via `conda create -n snakePipes -c mpi-ie -c bioconda -c conda-forge snakePipes`
  • Update Genome configuration file with path to indices and annotations.
  • Move to this repository and run the example command.sh

Files

Files (2.3 GB)

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md5:7c822de19958d69bcebe22b1d48885a3
2.3 GB Download
md5:d087cba963ba97393e2f25386cfe1056
309 Bytes Download
md5:72a8ed9bd0baa4354118fd5d7f43d1a9
180 Bytes Download