Published March 27, 2020
| Version v4
Dataset
Open
Benchmarking algorithms for gene regulatory network inference from single-cell transcriptomic data
Authors/Creators
- 1. Virginia Tech
Description
This repository contains input files from the synthetic, curated, and processed experimental single-cell gene expression datasets used in BEELINE.
New in version 4:
1) We are updating the configuration files and directory structure for the BEELINE v1.1 release.
2) PlotSyntheticNetworks.yaml and PlotCuratedNetworks.yaml can be used to recreate Figures 2 and 4, respectively, from the original paper.
3) This version will not work with versions of BEELINE before BEELINE v1.1. Use version 3 of this dataset if you are using code from before 2026/03/13.
Files
BEELINE-data.zip
Files
(279.1 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:9ea93065004f2f12022adeeaf3728edd
|
262.3 MB | Preview Download |
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md5:a7dca84d302bb127bad962ae52815662
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16.8 MB | Preview Download |
Additional details
Software
- Repository URL
- https://github.com/Murali-group/Beeline