PartSeg - segmentation and reconstruction tool for 3D microscopy images

• Add creating custom label coloring.
• Change execs interpreter to python 3.7.
• Add masking operation in Segmentation Mask.
• Change license to BSD.
• Allow select root type in batch processing.
• Add median filter in preview.

• eb74950d86005c87997596e7678018bbf5736c79 release 0.10.0
• f302692742d5a8d19f05f3d4479e6cacc56f5eed fixes similar functions from lgtm (#28)
• fbc1eda9f2210a249a4469123758e2fe1f7372e6 fix codacy warnings, move main window base class to proper directory
• c8c60f1bd5046fdce01d5addcc7656671652bbc4 bump version, upgrade readme
• 6d18d2f96d16e9e93824898f41339b4bcef53b82 Fix problems showed by codacy and lgtm
• 1adf83c6df0b7857fbf3e6414004c516b369a2b9 Merge branch 'master' into develop
• 38bd6cc5fbaf2945d39cf844c1ca733bf2c541e7 fix notebook
• 96504630de9049ccaa1d5be1a194da914ed5e9c2 PR fixes
• 49a9b714eb1d3f8ff169df6990f98d22c2d9690f Add saving history and test for it.

• a53247863ce498b8909ca5ae4b71df514ef6bb7f move fixtures to conftest <details><summary><b>See More</b></summary>

• f75dafb1a1a9d8c8290a96830bf0a26e768a525c add setting history in settings

• 7b40fc9d2cb517f4a085b8c74f749650ab5ec022 implement masking operation with support history in mask segmentation
• d6c7a93bd59a531d8841a2e60a3f527ef0fcd88d make histore eleemnt more generic, add more test
• eb086c2ab044830620e1794d0ca08a5a1c6dfccf extract history support to more abstract interface in BaseSettings
• 00db2ad03ce198abf3343377da6d497a04e5f051 add mask parameter to SegmentationTuple and use mask in calculating final mask for segmentation.
• e001eddec9b565117f6f45dd44b79c2e3556e1e5 Move mask presentation properties to separate tab in channel control
• 8b03a7dd7afe3f7d3c23c53c1cf898b74de58814 Create ImageViewWithMask in common gui
• a2ca4ad6d65b1c54e7958b6ff60ec69ee639d180 add io operations for mask
• 2938ebbc93b52a60940ff65cf5151a56c547a3b9 when use median filter in preview int instead of float
• f99f16f08b0e166815a82275ab0befc6872f43c8 fix PARTSEG-30
• fc877c398aca34bbc516e7cce617973ba4babf11 fix two bugs connected with refresh list of profiles in batch plan
• 9ff606b2e3b19d42ddc160f9be54e6cc024ee55f reverse change of behavior of "Save selected components"
• ceddd911a57964f174fde31b6223158b6e4335f9 Language fixes in interface
• eb6b6aeed1f113b95edbdd44d8ec588e7c7f417a Add information about mask component number
• 0638566196c6c7b672e6934a25e05e02e7adcb15 bump requirements
• b35433d55900058f710576e4b80ce99840caa244 always report in prerelese
• ff2718cdffc868a76d43d6945509cb730fdcf377 fix errors in saving components in mask create and calculation per component ratio
• 4c4954d7e4382814ea22af64a383b15f08e53f26 add possibility to use median filter preview
• 0859989389c571d9854ecb92070abb9a837063af fix typos in prepare plan
• f0c2eb2ac33b2f08d181eb32962cfda25df8c216 change cli parameter to new names
• 3efee4fce654ab9a1cea4b236b2a710b83b177f0 add test for mask create component
• e2339acd3b70fe9b788b24f749da521adea6bedc fix problem with obsolete cool bars in algorithm widget.
• a2cdf597aa72dc011b77bbd47d54e4342cff58a6 fix. Change name of rename/delete button when change pipeline/profile selection
• 281b3c9b5385037df33fefef4ed7abfa12a563ea fix bug in reading mask in batch, fix formatting errors
• 047d19536722013d65eb286e90a3fbd28d468bc1 use _extensions from imagecodecs to create hiddenimports
• 1e9b6cf8a896cf2619a09a50c1fae81a44f682bb fix PARTSEG-2X
• a6ac24d590f8ebf36f8f7a0848e035edfbfa2f4f Change license to BSD
• 42a4637b1cccf9492779f66a22c00d67a7673d73 bugfix: try to guess mask location if not given
• 9d7129fefd85d086016a9c811b0cb6a81531cde4 move qt intersphinx to separate package
• ad3f9c9058bb9fb627d46b88d940f3608026c538 pin imagecodecs
• b76e388b2ca5f8cf6d8ef7175da0c11ed0eb5151 set proper names of applications
• 9d1a00d9418472644764b806bc63f5556d6ff286 Change Batch plan root type.
• 71d25430c789f53589f27bd6e49a5ccc4fcd1d90 refactor batch calculation backend, add comments, improve documentation
• 761ba628809591efc15f98d9653b1ae8afdef5b7 block Pyside2 5.14.1 on travis
• 944fab815572b7ebb8f8e4b1ce7f16196a56a554 fix flake8 reported problems
• ba61efacd50d7e106e6dc3d9c13c1c422761b0d5 bump requirements [ #17 ]
• 78b5f2b59925b3d363922200b256e3dafc86aa4c initial changes for pep8 compatibility
• 18cdd0807d679d0a09b911c61414293f548243d3 Reformat code to black style (https://github.com/psf/black)
• 135d0db599fd05968c5cf3561d759e9666cf23ab fix save components
• 9c1ad25ed2011762cd042c7ed9962d4f9bd3beed first changes to allow masking operation in mask segmentation
• ff87621a1d161fc99bb824fdce6befede988e268 Fix bug with to long description of component sizes
• 5218286e4a739a1b9483c54b43127cca517992d6 fix config dir import in pre release
• e8e99aff7ed4061d8acb427fd71942061838b6cf Fix test configuration and bump version
• 1ebd8c1f83826aeec9aa2206be7c9c0bdf29136b change to use tiff files instead of numpy array in saved project
• 483bce63c0b44400d5d8cbfbd24486427f39af09 add custom labels colors support
• fa6c220f6e6e64205c757b7403301f23ab79091e add PartiallyConstDict and LabelColorDict
• 36baabe635f11659ea29c8508719c7da05fa4981 bump requirements
• 2f1e6032417856f079767557276fabdc506a4bfc Upgrade notebook
• 1733a5531345a374044b1ede02c3771777048cb2 use custom lables colors instead of fixed
• 4a95c7757fb0de46d89974286ce094756f9d0280 fix setup.cfg
• 4f44882b0d3ca9c92d844a8ed2249865dff7aaf8 clean warning in test, remove obsolete print
• 118ad83d244e68626d6cfb6aad0969e02079c060 upgrade travis badge update badge alternative text
• 999e5848179254571042841da9ce1497a7e138f2 Migrate to pep 518 base build system
• 54a787e4fe2b9c14a24592682f1663fce8d1a780 upgrade requirements
• 53b29524d83548d2931634bd106b548677b60390 Fix url of homepage in updating window
• 346e7687afb4249d900a70667f720dfb2dc657a2 Use pytest.mask.parametrize to get better information about test fail
• d058ee2698667ec19c73be2479b7adfe46c26c72 update documentation. Make reader classes more generic.
• c8018f28b90318918e01c9eec31eb11dc6027550 bump python version for pyinstaller builds from 3.6 to 3.7
• daf8a0792734fbe8edf9b271398be50b3c8c6d7c test refactor, create sub directory for PartSegImage tests

This list of changes was auto generated.</details>