Published March 4, 2020
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The complete mitochondrial genome of Zicrona caerulea (Linnaeus) (Hemiptera: Pentatomidae: Asopinae) and its phylogenetic implications
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Zhao, Qing, Cassis, Gerasimos, Zhao, Ling, He, Yifan, Zhang, Hufang, Wei, Jiufeng (2020): The complete mitochondrial genome of Zicrona caerulea (Linnaeus) (Hemiptera: Pentatomidae: Asopinae) and its phylogenetic implications. Zootaxa 4747 (3): 547-561, DOI: 10.11646/zootaxa.4747.3.8
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- Avise, J.C., Arnold, J., Ball, R.M., Bermingham, E., Lamb, T., Neigel, J.E., Reeb, C.A. & Saunders, N.C. (1987) Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics. Annual review of ecology and systematics, 18, 489-522. https://doi.org/10.1146/annurev.es.18.110187.002421
- Bai, J., Xu, S., Nie, Z., Wang, Y., Zhu, C., Wang, Y., Min, W., Cai, Y., Zou, J. & Zhou, X. (2018) The complete mitochondrial genome of Huananpotamon lichuanense (Decapoda: Brachyura) with phylogenetic implications for freshwater crabs. Gene, 646, 217-226. https://doi.org/10.1016/j.gene.2018.01.015
- Bankevich, A., Nurk, S., Antipov, D., Gurevich, A.A., Dvorkin, M., Kulikov, A.S., Lesin, V.M., Nikolenko, S.I., Pham, S. & Prjibelski, A.D. (2012) SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. Journal of computational biology, 19, 455-477. https://doi.org/10.1089/cmb.2012.0021
- Bantock, T., & Botting. J. (2013) British Bugs, an online identification guide to UK Hemiptera.Available from: http://www.briti shbugs.org.uk/index.html (accessed 3 February 2020)
- Benson, G. (1999) Tandem repeats finder: a program to analyze DNA sequences. Nucleic acids research, 27, 573-580. https://doi.org/10.1093/nar/27.2.573
- Bernt, M., Donath, A., Juhling, F., Externbrink, F., Florentz, C., Fritzsch, G., Putz, J., Middendorf, M. & Stadler, P.F. (2013) MITOS: improved de novo metazoan mitochondrial genome annotation. Molecular phylogenetics and evolution, 69, 313- 319. https://doi.org/10.1016/j.ympev.2012.08.023
- Bhaskaran, P. & Sebastian, C.D. (2015) Genetic structure and molecular phylogeny analysis of Zicrona caerulea using COI gene sequences. Biodiversity & Evaluation: Perspectives and Paradigm shifts, 2015, 247-250.
- Bolger, A.M., Lohse, M. & Usadel, B. (2014) Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics, 30, 2114-2120. https://doi.org/10.1093/bioinformatics/btu170
- Cameron, S.L. (2014) Insect mitochondrial genomics: implications for evolution and phylogeny. Annual review of entomology, 59, 95-117. https://doi.org/10.1146/annurev-ento-011613-162007
- Clary, D.O. & Wolstenholme, D.R. (1985) The mitochondrial DNA molecule ofDrosophila yakuba: nucleotide sequence, gene organization, and genetic code. Journal of Molecular Evolution, 22, 252-271. https://doi.org/10.1007/BF02099755
- Coil, D., Jospin, G. & Darling, A.E. (2014) A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data. Bioinformatics, 31, 587-589. https://doi.org/10.1093/bioinformatics/btu661
- Du, Z., Hasegawa, H., Cooley, J.R., Simon, C., Yoshimura, J., Cai, W., Sota, T. & Li, H. (2019) Mitochondrial Genomics Reveals Shared Phylogeographic Patterns and Demographic History among Three Periodical Cicada Species Groups. Molecular biology and evolution, 36, 1187-1200. https://doi.org/10.1093/molbev/msz051
- Edgar, R.C. (2004) MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC bioinformatics, 5, 113. https://doi.org/10.1186/1471-2105-5-113
- Funk, D.J. & Omland, K.E. (2003) Species-level paraphyly and polyphyly: frequency, causes, and consequences, with insights from animal mitochondrial DNA. Annual Review of Ecology, Evolution, and Systematics, 34, 397-423. https://doi.org/10.1146/annurev.ecolsys.34.011802.132421
- Gastineau, R., Kim, S.-Y., Lemieux, C., Turmel, M., Witkowski, A., Park, J.-G., Kim, B.-S., Mann, D.G. & Theriot, E.C. (2019) Complete mitochondrial genome of a rare diatom (Bacillariophyta) Proschkinia and its phylogenetic and taxonomic implications. Mitochondrial DNA Part B, 4, 25-26. https://doi.org/10.1080/23802359.2018.1535852
- Goodwin, S., McPherson, J.D. & McCombie, W.R. (2016) Coming of age: ten years of next-generation sequencing technologies. Nature Reviews Genetics, 17, 333. https://doi.org/10.1038/nrg.2016.49
- Grazia, J., Schuh, R.T. & Wheeler, W.C. (2008) Phylogenetic relationships of family groups in Pentatomoidea based on morphology and DNA sequences (Insecta: Heteroptera). Cladistics, 24, 932-976. https://doi.org/10.1111/j.1096-0031.2008.00224.x
- Harismendy, O., Ng, P.C., Strausberg, R.L., Wang, X., Stockwell, T.B., Beeson, K.Y., Schork, N.J., Murray, S.S., Topol, E.J. & Levy, S. (2009) Evaluation of next generation sequencing platforms for population targeted sequencing studies. Genome biology, 10, R32. https://doi.org/10.1186/gb-2009-10-3-r32
- Hassanin, A., Leger, N. & Deutsch, J. (2005) Evidence for multiple reversals of asymmetric mutational constraints during the evolution of the mitochondrial genome of Metazoa, and consequences for phylogenetic inferences. Systematic biology, 54, 277-298. https://doi.org/10.1080/10635150590947843
- Hofacker, I.L. (2003) Vienna RNA secondary structure server. Nucleic acids research, 31, 3429-3431. https://doi.org/10.1093/nar/gkg599
- Kamarudin, K.A. & Shah, A.A. (1978) The potential of Haltica cyanea Weber (Coleoptera: Chrysomelidae) as a biological control agent of Melastoma malabathricum Linn. MARDI Research Bulletin, 6, 15-24.
- Kearse, M., Moir, R., Wilson, A., Stones-Havas, S., Cheung, M., Sturrock, S., Buxton, S., Cooper, A., Markowitz, S. & Duran, C. (2012) Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics, 28, 1647-1649. https://doi.org/10.1093/bioinformatics/bts199
- Lanfear, R., Calcott, B., Ho, S.Y. & Guindon, S. (2012) PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Molecular biology and evolution, 29, 1695-1701. https://doi.org/10.1093/molbev/mss020
- Li, T., Hua, J., Wright, A.M., Cui, Y., Xie, Q., Bu, W. & Hillis, D.M. (2014) Long-branch attraction and the phylogeny of true water bugs (Hemiptera: Nepomorpha) as estimated from mitochondrial genomes. BMC evolutionary biology, 14, 99. https://doi.org/10.1186/1471-2148-14-99
- Ma, L.Y. (1984) Preliminary observation of predation habits of Ziocrona caerulea L. in Tarim, conservation area of Populus euphratica. Journal of Xinjiang University (Science & Engineering), (1), 78-79.
- Rider, D.A. & Zheng, L.Y. (2002) Checklist and nomenclatural notes on the Chinese Pentatomidae (Heteroptera) I. Asopinae. Entomotaxonomia, 24, 107-115..
- Ronquist, F., Teslenko, M., Van Der Mark, P., Ayres, D.L., Darling, A., Hohna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic biology, 61, 539-542. https://doi.org/10.1093/sysbio/sys029
- Saccone, C., De Giorgi, C., Gissi, C., Pesole, G. & Reyes, A. (1999) Evolutionary genomics in Metazoa: the mitochondrial DNA as a model system. Gene, 238, 195-209. https://doi.org/10.1016/S0378-1119(99)00270-X
- Shi, A., Li, H., Bai, X., Dai, X., Chang, J., Guilbert, E. & Cai, W. (2012) The complete mitochondrial genome of the flat bug Aradacanthia heissi (Hemiptera: Aradidae). Zootaxa, 3238 (1), 23-38. https://doi.org/10.11646/zootaxa.3238.1.2
- Simon, C., Buckley, T.R., Frati, F., Stewart, J.B. & Beckenbach, A.T. (2006) Incorporating molecular evolution into phylogenetic analysis, and a new compilation of conserved polymerase chain reaction primers for animal mitochondrial DNA. Annual Review of Ecology, Evolution, and Systematics, 37, 545-579. https://doi.org/10.1146/annurev.ecolsys.37.091305.110018
- Song, N., Liang, A. & Bu, C. (2012) A molecular phylogeny of Hemiptera inferred from mitochondrial genome sequences. PLoS One, 7, e48778. https://doi.org/10.1371/journal.pone.0048778
- Stamatakis, A. (2015) Using RAxML to infer phylogenies. Current protocols in bioinformatics, 51, 6.14.1-6.14.14. https://doi.org/10.1002/0471250953.bi0614s51
- Tamura, K., Stecher, G., Peterson, D., Filipski, A. & Kumar, S. (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Molecular biology and evolution, 30, 2725-2729. https://doi.org/10.1093/molbev/mst197
- Thomas, D.B. (1994) Taxonomic synopsis of the Old World Asopinae genera (Heteroptera: Pentatomidae). Insecta Mundi, 8 (3-4), 199.
- Wang, S. Y., Cui, J.Z., Li, W.Z., & Zhang,. Y. (2005) The feeding habits of the genus Altica and biological significance. Chinese Bulletin Entomology, 42, 385-390.
- Wang, J., Zhang, L., Zhang, Q., Zhou, M., Wang, X., Yang, X. & Yuan, M. (2017) Comparative mitogenomic analysis of mirid bugs (Hemiptera: Miridae) and evaluation of potential DNA barcoding markers. PeerJ, 5, e3661. https://doi.org/10.7717/peerj.3661
- Xue, H., Wei, J., Huang, Z., Li, W. & Yang, X. (2018) Your chemical coat tells me you are my delicacy: a predatory stink bug uses cuticular hydrocarbons to identify prey. Chemoecology, 28, 69-73. https://doi.org/10.1007/s00049-018-0255-7
- Yang, W., Zhang, Y., Feng, S., Liu, L. & Li, Z. (2018) The first complete mitochondrial genome of the Japanese beetle Popillia japonica (Coleoptera: Scarabaeidae) and its phylogenetic implications for the superfamily Scarabaeoidea. International journal of biological macromolecules, 118, 1406-1413. https://doi.org/10.1016/j.ijbiomac.2018.06.131
- Yuan, M., Zhang, Q., Guo, Z., Wang, J. & Shen, Y. (2015a) Comparative mitogenomic analysis of the superfamily Pentatomoidea (Insecta: Hemiptera: Heteroptera) and phylogenetic implications. BMC genomics, 16, 460. https://doi.org/10.1186/s12864-015-1679-x
- Yuan, M., Zhang, Q., Guo, Z., Wang, J. & Shen, Y. (2015b) The complete mitochondrial genome of Corizus tetraspilus (Hemip- tera: Rhopalidae) and phylogenetic analysis of Pentatomomorpha. PLoS One, 10, e0129003. https://doi.org/10.1371/journal.pone.0129003
- Zhang, D. & Hewitt, G.M. (1997) Insect mitochondrial control region: a review of its structure, evolution and usefulness in evolutionary studies. Biochemical Systematics and Ecology, 25, 99-120. https://doi.org/10.1016/S0305-1978(96)00042-7
- Zhang, D., Li, M., Li, T., Yuan, J. & Bu, W. (2018) A mitochondrial genome of Micronectidae and implications for its phylogenetic position. International journal of biological macromolecules, 119, 747-757. https://doi.org/10.1016/j.ijbiomac.2018.07.191
- Zhang, S., Shu, J., Wang, Y., Liu, Y., Peng, H., Zhang, W. & Wang, H. (2019) The complete mitochondrial genomes of two sibling species of camellia weevils (Coleoptera: Curculionidae) and patterns of Curculionini speciation. Scientific reports, 9, 3412. https://doi.org/10.1038/s41598-019-39895-8
- Zhang, S.F. translate (1994) Insectivorous natural enemies of Leptinotarsa decemlineata in Europe. Plant Quarantine, 8 (5), 276-278.
- Zhao, Q. (2013) A revision of the Asopinae from China and the study of DNA taxonomy of Arma, Carbula and Eysarcoris (Hemipetra: Pentatomidae). PHD thesis, Nankai University, Tianjin, 279 pp. [in Chinese]
- Zhao, Q., Wang, J., Wang, M., Cai, B., Zhang, H. & Wei, J. (2018) Complete mitochondrial genome of Dinorhynchus dybowskyi (Hemiptera: Pentatomidae: Asopinae) and phylogenetic analysis of Pentatomomorpha species. Journal of Insect Science, 18, 44. https://doi.org/10.1093/jisesa/iey031
- Zhao, Q., Wei, J., Zhao, W., Cai, B., Du, X. & Zhang, H. (2017) The first mitochondrial genome for the subfamily Asopinae (Heteroptera: Pentatomidae) and its phylogenetic implications. Mitochondrial DNA Part B, 2, 804-805. https://doi.org/10.1080/23802359.2017.1398599
- Zhu, X., Xin, Z., Wang, Y., Zhang, H., Zhang, D., Wang, Z., Zhou, C., Tang, B. & Liu, Q. (2017) The complete mitochondrial genome of Clostera anachoreta (Lepidoptera: Notodontidae) and phylogenetic implications for Noctuoidea species. Genomics, 109, 221-226. https://doi.org/10.1016/j.ygeno.2017.04.002
- Zuker, M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic acids research, 31, 3406- 3415. https://doi.org/10.1093/nar/gkg595