Published April 7, 2021
| Version v2.0
Software
Open
Rmomal/EMtree: EMtree v2.0
Description
In this second version, EMtree was improved and present with new functionalities:
- Stable handling of big networks (200 to 1000 nodes)
- Set a random initialisation of the EM weights parameters ("random.init" parameter of main function EMtree())
- Run stability selection of probability threshold with the StATS function
- Use a user-provided function for the estimation of the Gaussian covariance matrix in ResampleEMtree ("user_covariance_estimation" parameter)
- Force some unlinked nodes ("unlinked" parameter)
The overall numerical stability was improved thanks to an adaptative conditioning parameter. The vignette Fatala_Net has been updated, and illustrates the new graphic possibilities among which the storing of a layout and the colouring of edges. Finally, the functions "ComparEMtree()" and "compare_graphs()" were deleted.
Files
Rmomal/EMtree-v2.0.zip
Files
(5.1 MB)
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md5:575d4fd9fe7667c32cff3fbf6ff899f0
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Additional details
Related works
- Is supplement to
- https://github.com/Rmomal/EMtree/tree/v2.0 (URL)