Critical Assessment of Metagenome Interpretation
Published January 28, 2020 | Version 2.0.8 beta
Dataset Open

Kraken 2.0.8 beta taxonomic binning of the CAMI 2 Mouse Gut Toy data set, gold standard pooled assembly

Authors/Creators

  • 1. Helmholtz Centre for Infection Research

Description

Taxonomic binning of the gold standard pooled assembly
Software: Kraken
SoftwareVersion: 2.0.8 beta
DataURL: https://data.cami-challenge.org/participate
SoftwareURL: https://ccb.jhu.edu/software/kraken2/
ReferenceDatabase: built 2019-05-22
Taxonomy: NCBI 2019-05-22
ShortReadsUsed: False
LongReadsUsed: False
CommandUsed: kraken2-build --standard --db kraken2db_std --use-ftp
kraken2 --db kraken2db_std --threads 16 --output 19122017_mousegut_scaffolds.kraken --report 19122017_mousegut_scaffolds.kreport anonymous_gsa_pooled.fasta
cat 19122017_mousegut_scaffolds | awk '{print $2 "\t" $3}' > 19122017_mousegut_scaffolds.cami

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