tardis-sn/tardis: TARDIS v3.0.dev3388

• ad8839152fb12cdac4d82df67c9a6031eb0d37ef Merge cb98d9cd5f073bfcde59671a23e5d36819d6e02d into 4635460496cad446f742368bdf50bb4c91af69be
• cb98d9cd5f073bfcde59671a23e5d36819d6e02d Update release-version.yml for Azure Pipelines
• 7f51d4e996d3f07ace41d80dbe065164b4e6a290 Update release-version.yml for Azure Pipelines
• 0c52796abeab5b402753562885eafb745ce88017 Update release-version.yml for Azure Pipelines
• e2ca43696c809b8382b3b130044513138abbd160 Update release-version.yml for Azure Pipelines
• 6da3f732d39beb4010a7185a963694185dedca6a Update release-version.yml for Azure Pipelines
• efccec92859d897ec3d3be070cb3c9ffe6967e47 Update release-version.yml for Azure Pipelines
• c6597cec5d219b140206b087b961aa5a47f8342f Update release-version.yml for Azure Pipelines
• f362c2b65536a9544c420d4e0b10b2ead73acf0a Update release-version.yml for Azure Pipelines

• 3239ea95b45a1236743c2b6cc13792a1ff555292 Set up release TARDIS version with Azure Pipelines <details><summary><b>See More</b></summary>

• 4635460496cad446f742368bdf50bb4c91af69be Fixed typo (#1013)

• f41f130a32ffb623de19470ac52c10f4669a1a3e Trying to get the right version number for automatic release (#1006)
• 741b18ece8984ba7322dd1d89564218d89224f44 Improvements for the update_reference section [docs] (#1008)
• 6bb343a747bc24e21d123b7bba6e617277a393f8 Gui fix (#1011)
• 71dad349b1ae65b347d587f13bfc12e4d9ba5819 Fix for packet source unit test (#1009)
• 4161630bc2d16fde954b699013d330bca3221b70 Fix for vboundary tests (#1007)
• ff873fbb7e54bf15711af7997d35cd39ee4cf84a Checking failing tests on Azure (#995)
• 5c90622573a825f10b4ad2f323b475afb0815e5d Add YML file for release version (#1005)
• 51b3f59ef6fa50ad23f94a6ab87c4b5aeb6534d5 Fixed csvy abundance indexing bug (#1004)
• 8ae6ae431858b42d1e2b4b793be8ad57c372da78 added new link to running
• efd57af8a46b1fa5612a66545a1fde66d2c9d7ed Update doc-build.yml
• 9de9900dfa0d65e25eeaeb359c0cf909028c3c02 Custom source packets (#1003) [ #1002 ]
• b3b45adaa07f210fc6d77cba9fa38e1b561c52bf Large cleanup operation (#994)
• df0ed42b03c5f049dad78ab4fbae4811ed5493ca Changes made to update_refdata documentation (#992)
• f451b6854c642192f1668203c26c303e37a2d2dd log additional properties in hdf witeout when --with-vpacket-logging is present (#967)
• 537ea72c678a3f489893c67a5776dfcf8e2f42f6 Fixes numpydoc for util (#969)
• 6dc2f0fcd6475103b76eb99cce42ba8cce7c8709 Fix typo (#985)
• d7732883f93909649782d7df14ee557a1bf65d02 Fix git clone rendering in installation (#983)
• 36ed619ad2f6c0af55245fcc7d5b2257822cff4f Pinned numpy to v1.15 (#982)
• 774e69c632d6f0ba8a7eeff1a27d4af97b98c6c1 Update tardis_env3.yml
• 0b947a4fbabe315a76c1376f131824acf5bb8ea8 Add further fix to quickstart link (#978)
• a73c464c89c42e68f995f65458cf77a1135b1826 Add links to Quickstart (#975)
• 873ebd93b4f061e97f537e95602b5d89db1eed64 Update tardis_env3.yml
• d2de755a859cbc60ee6c27af27929bc453841f76 Update tardis_env3.yml
• aaff2ced1c2033d6fc2e7f71c5118942c63142f7 Update tardis_env3.yml
• b4da5cb927ce71ee4c09239d31f6dfb462c96c5b Update doc-build.yml for Azure Pipelines
• b9b2194cab1675c325702bcfb8ce040992d16b5c Update tardis_env3.yml
• 00c021d17d4b8390796d2ac939b9ebb4289c1361 Update doc-build.yml for Azure Pipelines
• e73bc831aa17cd24f36e1c74892d5ac17da2f085 Incorporated Credit Policy directly
• 70092a44f2990273f60d57dc5992ddd12d94209a Update tardis_env3.yml
• f5b98cbcf7af8305963594851f1fcbbbbe9838e3 Update doc-build.yml for Azure Pipelines
• 90f9a007c1767cc1adae7a35e63e848dd7327c3c Added Credits
• 76db0d67544ea367eb1558a9bfc74eef13810c85 Fix formal integral spikes bug (see #970) (#971)
• 7b95ff66fb970e6b35cb3d5d503c39240ca533c5 removed the conda update
• 5bd8663c73f19a15ec82556a0d701cdbddec7b6f Merge pull request #968 from jamesgillanders/master [ #950 ]
• dbb7987d4eb24e80184f2db92449ab1dd21fcb70 Fixed GUI #950 tardis/gui/widgets.py
• 1d7870eba64695ba6825e946a8d6d70f1275c657 Isotope time0 (#965)
• 52e454685295965c76d2b33f5ec809dde405d812 fix AtomData repr. (#966)
• 4e5c8ecb01e6d2003031aee22405c4d40e397f21 Raise error if requested atoms are not in the atomic data (#964)
• 8b8c3bcc942257c71c10a914e534177a8bca2dd0 Csvy model config dict (#959)
• 7b8f28b1f563bcb2ed098afe5230e71fdf9882b4 Add issue template (#949)
• a2d1eb73fef43344b0a1509fef00b22900473815 Update tardis_env3.yml
• 2e8e0bfaf8580438a8297907b703ebd19d13bd8b Update simple_test_framework.yml for Azure Pipelines
• 6f4d2a2aefe7adc5394b8270319fcdbae0f59d54 Save integrated spectrum to hdf if requested (#960)
• 86f8644482bac541ddc9efe9d43625d744cf7007 add atom data downloader
• 2fcea6914e9b9c32b310034c74fc6b8df9f1c9f3 add blondin converter (#957)
• e8c6963f9c89e21c9979921cb25827492ea06eb8 Dilution factor fix (#956)
• 676a38c60e891b6453f829c610a4d369a402fa7f add both toymodels
• 18451832a4e54115a89bed1786bcd6b63ed635ef rename line interaction assumptions
• 93d748e5e2421c078ceb376edfd22006fc53ead1 add stuff
• e0ed796e4373fff5a6463eadef105cc8c1e1ad8c add explanations
• 067751f114a0cbf4f92d4e269abb861f2c31afc2 add blondin compare files
• c63440bfa536cf44aa2bd5e50047d6192dbce9a6 add plasma comparison
• eb4cf1b1a54b9a65f55135ebab86e5f2ce9710b3 Merge remote-tracking branch 'upstream/master' into docs/ccomparison
• ff39c5e48646ec2a14ed67840ebcee2a3f520e9b added download link
• 009b589db14e75e040874abbdc9f19bbea4271a4 add code comparison (#953)
• 0d69f672b38c2141b3c0bcaec49435d08f85dee3 add code comparison
• 1435ff16d90db01c7fd0e333dd9315038ec0fb0a Base schema fix (#952)
• 415d5e4cd954b55965bd409329d8f8d9b7dc5582 add apidoc to env file
• edf98ae16ffd1edf217e75112d8acf3d48232d2d Merge pull request #951 from wkerzendorf/docs/clean_up
• 18ab9f37a2a606e0e5560f0caf3eec9960e7bee3 Merge remote-tracking branch 'upstream/master' into docs/clean_up
• cf35dfcd0557b12adc54c9b72c9e537ef8830e64 add converters
• e0f5a04e16b7255dcd581b6978dc7cdd248aa329 Added Model Doc Page (#26)
• 0149d89c2f0a1596cbefbc243d7c4df884dc75c5 large cleanup operation
• 6d359621c2321417e0a371ea1da91b645f04f885 move configuration again
• baec4c4d990bb60fe69d3540a799926bd957a71e update the development section
• 595aba5c1f9584306d87b92e8d22306020fa1d87 further restructure
• 4101163831ab31b76231d38c675d2103465d8f92 move workflow to development
• 7c699d68ee145e46f391c33c1273d66ca32c2065 large restructure
• 470c08175ff30a1a7f0efdcbf140316b2a4480c9 several changes to the structure
• c9cd958551739d8ffd2991df76379107f851fdde restructure of documentation
• cee6c0d2810c99e1d497fb46e75936c554d6e5fe Update General CI Documentation (#943)
• adde5b0114f23634fe5afef6937b285174ad6b55 Merge pull request #936 from marxwillia/csvy_model
• 551d730153f778221c5dcaeb614df9add62d1ebb Cleaned PR
• 87c9b39d79538c40e39a05d408bf70b43cdb8e16 parent 8d9001822f586857f2f8353a56185310832886dc [ #940 ]
• 05f6c77c290de1798f7302a8bd048aefe38de586 Added csvy_model property to base schema.
• 0a7147fb72efa796021c7b43c90d11ce98ec809b Update self-hossted agent documentaiton (#942)
• 97dfb8402e56c634207578ac171be3c783b98973 Merge pull request #946 from tardis-sn/PR_trigger
• 88a56852e0ad1f43a4e6ef61347633d5ad6a5015 Update build documentation script
• f7f72ed787aa0a5ebad3765cf34778396a3df8f3 Merge pull request #945 from tardis-sn/revert-944-PR_trigger
• 3f6dcf3219b2886845a7c1ef4bda6955473d3341 Revert "Remove PR Trigger"
• 3b30298f5025129cda651b67f4d5c504432e9ece Merge pull request #944 from tardis-sn/PR_trigger
• 0a8f2199533f4bb2c6b1b03e00e96baedf11b3d9 Remove PR Trigger
• e74ebafd73486e8c8fcf3beb7a1f8e8686c0d99a Merge pull request #939 from Youssef15015/docs_deployment
• 6d7b50a723e1f07b0b509191368313a1ed96c32a Update CI documendation
• 8b7ec6a6633bfb71d5f56d469c1c8d682373f1b2 Deploying docuemntation using Azure
• b2c14e33d0be6f82e9d60064f496261157c20f0d Correct index script spelling (#940)
• 153736ae105b9fb2cf5ebf188729f25c9b910f5b Added csvy parser (#928)
• 9af7d7b0825572c6d7736014332edf8b8d1102fc Radiative recombination (#933)
• 7deee9bb94bee47feb6904f039eb9295d3dbab95 Relocated the azure_pipelines.yml into a new directory called pipelines, and renamed it as pipeline_A (#934)
• c23cfb2895f043c25aa961e8a92df1baa87edd46 Fix for conda-forge package (#930) [ astropy/astropy-helpers#221 ]
• 1bb044fb6b11acf8863d731c6ef7dbc00cbfd5d5 update the team
• 95b565c798f57cc03438d84b0948fbbf762cad56 update the citation and acknowledgement section
• 549adeecf15bf664b1720639d8175530b8045cc4 Density docs (#918)
• 9b2dccd7da54809339747cd36f22e85cdf9a1eaa Adding a TARDIS data repo (#926)
• b7d486aff07d79aed518446468268fa2e13d200e add svg image in sensible system
• 19ea00a15f9da5c3b3ddeddd7167612eb5d6767c Migrate beta_sobolev calculation from cython to numba (#924)
• c2a89ce9711da4d7cafc12249e5781f2520cd9b1 Merge pull request #925 from wkerzendorf/docs/fix_changelog
• 9b7a36e14508dffa02a87ffa1989cbc1bbc0abf0 Merge branch 'master' into docs/fix_changelog
• a044c55b576fc450db055af6e6fef360ddcc16e9 add markdown changelog - remove rst changelog
• 038772449469857a39928f7cb048999473b0c04e fix the filename for changelog
• 1d0f495b4b50ff2740c1aa05d0b4ec2b1694ce3c add changelog more prominently. remove old tardis env
• 3f2102f67a0807d37ce6c8758de61f96932e8f42 Merge pull request #923 from wkerzendorf/fix_nlte_normalization
• 6ecdd1e98cd3e5ff4a78fbacfd0a7e3caf0ec30e Revert "Fix nlte normalization (#920)" (#922)
• fd57afc26546a9ae9c7fbe3d2c7b14e794c7b560 Fix nlte normalization (#920) [ #784 ]
• de83a13509ef5c90630df694e50b5bb76ecf6d72 add changes builder to travis process (#921)
• f8010395da466967b9fba91bd8cb658d432d61c1 Add possibility to bias vpacket emission based on optical depth (#919)
• a41526551a779e6155bfee9f9ef32500a1e39cfb add changes builder to travis process
• 221d72de246df8a1c86def0a20d04f6c44d8c97a Merge remote-tracking branch 'upstream/master' into fix_nlte_normalization
• f98ef14766cd5f5b89764270156489f408d0731a make python3 compatible (#914)
• f6597797a5d1a587947b9f50761b12a9fe4d88cb general overhaul of the docs for 3.0 (#902)
• 96b19c0bb6ed0b7929fa94b6fdc8b0fe657d01a4 Update README.rst
• 32bcf38f21cfed8bf8482e2f3be2a83b00c95a3f make python3 compatible (#916)
• 750fb86bf9e05b667ad68490b5d7834e2d535e7e Parsing STELLA files for TARDIS (#915)
• 4f8e8cac3f860de127c4593813fb2dde8d0e4330 Use Russian roulette to kill v-packets with negligible weight (#911)
• 9e398b34c702d22681699e38512f45d7c7f12454 Update fetch_reference_data.sh
• 592cc80cc7b585a7eb654fe109d8a01da8ef15aa Relativity (#697)
• d209920e71196329e21b5bbe2c399ad26c4b5e1b disable auto_upgrade for setup_helpers
• cf1178ac0af28712772b59cf6b098708ad2e9798 .nojekyll added to docs (#901)
• e3d3fe6975abe3b8820302ff51ee91908d8d79a8 add pytest azurepipelines (#897)
• 4958e1740ab7fe80f2ba6f4b5ee7feddc0b7d845 Adding general build artefacts (#896)
• 1745c08630b30bc03ffdfb3a02ed89c2fbd3b9ac Update README.rst
• 908c8c082521c6231fe1f37be2a324b4e5d13d58 Azure pipeline for TARDIS (#894)
• 1127c22c95827aaea9824b01a6054b1b33ae2397 remove git lfs for doctr
• 02c07e6d71cb88e101dad401c21d774609a38107 add doctr to TARDIS (#893)
• 3c190c2dfa0c10349c290f2c818f1b2876fd522a adding azure-pipelines (#892)
• bc98430eed6851771f8170b582ced1919e83770e adding installation instructions for OpenMP
• 012c69450b99c640b763e593e64cd463bc645f50 New template setup from astropy (#891)
• 8f55b1d272ba005a2c7682d3395e523f3b19ac45 Set up CI with Azure Pipelines
• 04e60e0d6f187d98f734db9332ef38e2277b7bfe Update installation.rst (#888)
• e61beb6b503ddea65e4dd53b59137e4ab4fa6602 Pandas ix fix (#886)
• 04b4472ccd804a7bf39376f58f9593e5fa5133c2 Python3 version of TARDIS (#879) [ #25 ]
• 89270c26bc63011e2c536596b454c598e1106e58 add installation openmp fix to documentation
• 6e71f73a15aa895081bf44bfa504b5fb962dcea3 Adds description of gcc problem to documentation (#881)
• fc7465a1e8994b105480e0ba9f383f5ad082b089 Update README.rst
• e93283f8e07e90b4f7754582ec2768fbebf9049f Update README.rst
• 05cb381f3c49459c6ca7f9fe01b2311bf1a588d0 Use interpolated values to do formal integral with more shells (#859)
• 96d6c0c95ff29aac7ee6d8253c84278d8ce6bfe7 Update tardis_env27.yml
• 3d01a8528ca07b25f99034c02e62efdf69b2a3b6 Some small fixes related to the documentation and the building process (Fix #842) (#873)
• 0c6395376659f1884f400eb52e0f794295c4c947 Add Travis Stages: Activate Integration tests (#868)
• 7648c1974f0db7f5d324789fa3d1b9034db4f217 change order of env install
• ef055cea6f6f374d039ddc6dcbca2a72fb8c622b activate tardis before cython
• 916276dc0fd9c6f06cc7c6239fd453e20f114df0 Merge branch 'master' of github.com:tardis-sn/tardis into travis_update
• 6e0b58ccf9422dd287e06e115da4c89d8bb415c4 activate before cython install
• 0e8dafb2d63d5b4466a3b95e0f164795652e962b Add Travis Caching and separate scripts for CI (#866)
• 27732bf8c307e700564c330956985d3c2b5f92f5 update travis yaml
• c9afcb715d3fca329daee4ae2a7352730654446a remove space after equal
• 8c3a24678c91bcefc1113384b2de7ab5c1f928a1 update clone refdata
• 7c7a171e2ecb4384a667918f5925ea4bbccc3add remove git lfs from separate install
• ae8b654562dcf683bfbbefdefced2c161b6b3cb3 add single quotes
• 3d5b44460c33184673e519204e894593f16ecd6f update refdata path
• 8e66b6958d78c6fd4e1bbea008b03cfe990c56a0 Merge remote-tracking branch 'upstream/master' into travis_update
• 88edc63753efc1617c8912a439afe257f906d030 update comments from unoebauer
• 8c367dc703c15b6e337e21e9af12e721d246161d Unify unittest hdfs (#864)
• 44460c56f1886cadecb053bcc9c3a43e4dfe0173 update ref_data_home
• 0e6cf07e3c5a45b0d6b87e129c6ecaaefebfb2e2 remove the fetch reference data caching - to be done in next PR
• ebd95a2ffb9d9e75ca6692dc28c87d881b394ce9 ref data avail
• aed3f80ceed5d935ee145da6bd08c6b5925df61e fetch reference data
• d70a8933256f6c9f10b62c1610cea0897b3d4f99 add refdata to caching
• 076bfbe6d00476594edad6055d0a4672371415bc caching tardis env
• 2f319b1dd3a42acd60db072496642ca54b2a47da adding new ci helper
• ef04184f271b8c92476fad04508d749b8fb7e18c swap coveralls for codecov
• 5c1a8a0a3eeef4a44cf2fdf9527c615210e86ead remove cached miniconda
• fd1fe529b4521f742c73cf16e02d604cabaa0630 add caching
• 75d45aec3c286cbd83575134d86c81408b08bae5 Adding CodeCov integration (#865)
• dd4023e20a4631138fa0b4f628952e2f00558f90 fix documentation
• 08bbc01039b7622d317c83d43ea88c4cb866e7f5 update documentation for generate references
• f6b02f3959172e2f196dbc45cbdb8df46898f6ec add call_back to run_tardis (#860)
• 41d3c8fb291aa8b998540a976e3e1efdf456041e Thomson cross section: Continuation of PR #688 (#863)
• 22cdfbed71963ce7c2bedae5235556b81a4580b3 Add full test for formal integral method (#850)
• d6a2ac0d53b465909bd068a276197ac04292f82c Describe refdata update and workflow refactor (#861)
• b432f8a37c99423b9e388d892756e4f1b8750277 Add capability to store information about the plasma state during iterations (#848)
• e91a7b70a62fe660bd6a616240e2b77e3425108a Refactor logging (#857)
• 29f0193c2879aa288c1ce6b902d58423f070bf07 Extend formal integral to line_interaction_type macroatom (#856)
• 4622143cf39746803663a79bbd296b0b32769910 Make the conda-forge channel the only channel (#855)
• 7a86d201098a16fa701f44fadc31396786f459dc Fix formal integral (#853)
• df2bdf19d05b4905dda55cd8da3b9669fb9c0f82 Missing refdata (#849)
• 19f14efe5b41e22430bc03c1f906348c83d036ee add atomic data description (#851)
• da5664adce86b93c81027eb2be104c2e293d150c update the text to be correct
• 9d323a47c495ff530c14ba6422ac17e148464ebb Revert "change to new cython version"
• 247a4424b19aa5cfa6e596ede1ddde69d2d54eb8 Revert "add cython version check"
• 09ca41d5782a85d469483acc9143d97a2d8f896a Revert "remove OSX build for now"
• 2cb950533c1c00e3a848c829443a7369caf93f93 Revert "add the cython compile example"
• e7310e6ffb89de5598d3272a3702a23617394d2b add the cython compile example
• abc554aca8f818ffb47a6f103dd529e635938f8c remove OSX build for now
• 9f6b73b35eed5f0898640d8fe7e061c355314c03 add cython version check
• b4c862bfdd6d730bd2d65a6210f5a5f71f5d5575 change to new cython version
• 568dc8cec314cf8f48d7ef8b3d079cb384286215 Update Documentation: new location of tardis_example (#845)
• 78aa63380684297101133791e8efeda08d0b42c8 Fix issue with custom_composition reader (#843)
• 8eea19f523f24e4a1b3db1770c05a9e42d3380df Remove bbsampling from schema file (#844)
• 2c3ce24f96f4f7520b64043adef1aa1539cffee4 Add json sphinx (#837)
• 96e3e3c5883676aad20d01ad9783caba19ed087f Fixed indentation and position of delta_treatment in plasma/standard_plasmas.py (#841)
• 1ee849ee83b9f826c79b449b4357d70cbaec4968 fix cython version to specific commit (#838)
• 6e00d66262aa3a4e237775e161922b4cb1066cf9 add plex to requirements
• ae09381bd5b2274bb0578613b7a94e3ecc752567 Simplify convergence strategies (#821)
• d546c95d0fe8d4f660147fb0dd1c23b184bf38ee add danger about including a # for the custom abundance
• 1724ff1f5f85a740d418b98a993b0c63693fd3bd remove unnecessary documentation that is now in toctree
• 1baa780cbe9327376f63f93e562f870b4dc8c07e restructure landing page to use notebooks (#833)
• a8e6aa5035873247db99e19d0000567aa88fb3c2 Fixes #830 (#832)
• dff362ebde3aefce7f8fe73acce23bf64752b046 Fix NLTE Normalization - issue #784 even more gs
• 03c7acd1d2b9d97091753f199b39b13ef5da550f Flip g_ratio in NLTE collision matrix to fit new atomic data - issue #784
• d243f4cfe10168ce1dd06b78d30e2a358e1c9b48 Fix NLTE Normalization - issue #784 some more gs
• b54f34b5ebe6e22426d94265e8236528fabd9764 Fix NLTE Normalization - issue #784 g.loc
• 68bd014e91b6007a0b8899631f3667e88ccb78b5 Fix NLTE Normalization - issue #784

This list of changes was auto generated.</details>