Petra Bleeker Research Group
Published January 24, 2020 | Version v2
Dataset Restricted

Scaled counts of trichome mRNA-seq from the 20 accessions

Authors/Creators

  • 1. University of Amsterdam

Description

mRNA-seq scaled counts from stem trichomes of the 20 accessions. 

Pipeline: rnaseq-analysis-kallisto-sleuth: release v0.2.2

https://github.com/BleekerLab/rnaseq-analysis-kallisto-sleuth/releases

 

Transcriptome used: S. lycopersicum ITAG4.0 cDNA

Table of genotypes

 

| accession  | species                        | accession nr | synonym | origin      |
|------------|--------------------------------|--------------|---------|-------------|
| LA2172     | S. arcanum                     | TR0009       | -       | Peru        |
| LA1401*    | S. cheesmaniae f. minor        | EA00652      | -       | Ecuador     |
| LA1840     | S. chmielewskii                | -            | -       | unknown     |
| LA2695     | S. chmielewskii                | EA00759      | -       | Peru        |
| LA0407     | S. habrochaites f. glabratum   | EA00558      | -       | Ecuador     |
| LA1777     | S. habrochaites f. hirsutum    | EA00703      | -       | Peru        |
| PI134418   | S. habrochaites f. glabratum   | TR00015      | LYC38   | unknown     |
| LYC4       | S. habrochaites f. hirsutum    | TR00017      | -       | unknown     |
| LA1718     | S. habrochaites f. glabratum   | EA00699      | LYC4934 | Peru        |
| PI127826   | S. habrochaites f. hirsutum    | -            | -       | Peru        |
| LA1364     | S. huaylasense                 | TR00030      | -       | Peru        |
| Moneymaker | S. lycopersicum                | -            | C32     | Netherlands |
| LA4024     | S. lycopersicum                | TA209        | -       | unknown     |
| LA2133     | S. neorickii/L. parviflorum    | EA00729      | -       | Peru        |
| LA0735     | S. neorickii                   | TR00025      | LYC140  | unknown     |
| LA0716     | S. pennellii                   | EA00585      | -       | Peru        |
| LA1278     | S. peruvianum/pimpinellifolium | TR00005      | -       | unknown     |
| LA1954     | S. peruvianum                  | EA00713      | -       | Peru        |
| LA1578     | S. pimpinellifolium            | EA00674      | -       | Peru        |

 

 

Notes

Stem trichome mRNA-seq scaled estimates

Files

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Additional details

Funding

Dutch Research Council
Defence in the wild; from trichome transcriptomes and metabolomes to breeding tools for defence markers in tomato 2300178970