Morphological phylogenetics evaluated using novel evolutionary simulations
Authors/Creators
- 1. Department of Earth and Environmental Sciences, University of Manchester, Manchester M13 9PL, UK
- 2. Department of Earth Science and Engineering, South Kensington Campus, Imperial College London, SW7 2AZ, UK
Description
Supplementary data from the following publication:
Keating, J.N., Sansom, R.S., Sutton, M.D., Knight, Chris G., and Garwood, R.J. Morphological phylogenetics evaluated using novel evolutionary simulations. Systematic Biology.
This comprises: exemplar outputs from both the TREvoSim and MBL2017 software; the R functions employed herein for node-based distance measures; the scripts used for analysis for this study; output codes for the current study for use with the TREvoSim logging system, and the modified source code for the USPR software used herein.
USPR was coded by Chris Whidden and Frederick Matsen, and published under a GNU liscense. The software is described in the following publication:
Whidden C., Matsen F. 2018. Calculating the Unrooted Subtree Prune-and-Regraft Distance. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 16(3):898–911.
Files
Keating_et_al_exemplar_MBL2017_output.zip
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Additional details
Funding
- UK Research and Innovation
- The Software Sustainability Institute: Phase 2 EP/N006410/1
- UK Research and Innovation
- Overcoming the morphology problem of phylogenetics BB/N015827/1
- UK Research and Innovation
- SSI: The UK Software Sustainability Institute EP/H043160/1