Published June 19, 2020 | Version v1.0.8
Software Open

knights-lab/SHOGUN: SHOGUN: Accurate, scalable metagenomic quantification with shallow shotgun sequencing

Authors/Creators

  • 1. University of Minnesota
  • 2. University of California, San Diego
  • 3. ETH Zürich

Description

Updates for this release:

  • Reworks the assign taxonomy command to use significantly less memory.
  • The memory is now not dependent on the size of the alignment file.
  • The LCA is now tree based instead of string based.
  • It is possible to now do a confidence based LCA taxonomic profile

Files

knights-lab/SHOGUN-v1.0.8.zip

Files (17.8 MB)

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Additional details

Related works

Is supplement to
https://github.com/knights-lab/SHOGUN/tree/v1.0.8 (URL)