Planned intervention: On Thursday 19/09 between 05:30-06:30 (UTC), Zenodo will be unavailable because of a scheduled upgrade in our storage cluster.
Published December 20, 2019 | Version 1.0.0
Dataset Open

DATASET: De novo assembly and functional annotation of the heart + hemolymph transcriptome in the Caribbean spiny lobster Panulirus argus

  • 1. Clemson University
  • 2. University of New Hampshire

Description

The spiny lobster Panulirus argus is an ecologically relevant species in shallow water coral reefs and target of the most lucrative fishery in the greater Caribbean region. This study reports, for the first time, the heart + hemolymph transcriptome of the Caribbean spiny lobster Panulirus argus assembled from short Illumina 150 bp PE raw reads. A total 80,152,094 raw reads were assembled using the Oyster River Protocol pipeline that aspires to become the standard protocol for de novo transcriptome assembly. The assembly resulted in a total of 254,773 transcripts. Functional gene annotation was conducted using the software package 'dammit' that also aspires to become the standard protocol for de novo transcriptome annotation. Lastly, gene enrichment analyses were conducted using the Gene Ontology (GO), KEGG pathway analyses (Kaas), and KOG (WebMGA) databases. This resource will be of utmost importance in future research aiming at exploring the effect of local and regional anthropogenic disturbances as well as global climate change on the molecular physiology of this overexploited species.

Files

Files (76.9 MB)

Name Size Download all
md5:12b84fcd19c059f0fca294c19def5871
59.1 MB Download
md5:4e7432413df0a530d3a343dc2a577e82
17.8 MB Download

Additional details

Funding

Ecophysiological genomics of fat oxidation and renal vasoconstriction during acute dehydration 1R35GM128843-01
National Institutes of Health