Published December 3, 2019
| Version v2.0.0
Software
Open
biowdl/RNA-seq: Release 2.0.0
Authors/Creators
- 1. @LUMC
- 2. Leiden University Medical Center
- 3. LUMC
Description
- Replace the bam-to-gvcf and jointgenotyping pipelines with a gatk-variantcalling pipeline. This reduces complexity, allows for more efficient running of the pipeline and uses less filesystem storage.
- Update biowdl-input-converter tot the latest bugfix release (0.2.1)
- Update STAR version to 2.7.3a
Simplify the pipeline so it uses much less subworkflows. This reduces the complexity for cromwell and reduces inefficiencies that are caused by waiting for the subworkflows to finish.
It also makes configuring memory or cpu requirements for tasks in the workflow a lot easier, as these are not as deeply nested anymore.
Files
biowdl/RNA-seq-v2.0.0.zip
Files
(4.3 MB)
| Name | Size | Download all |
|---|---|---|
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md5:8f386b6c8fd98f4eec6dee0bf9a54ba0
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4.3 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/biowdl/RNA-seq/tree/v2.0.0 (URL)