Discriminant analysis in Whole genome sequencing and phylogenetic characterization of a novel bat-associated picornavirus-like virus with an unusual genome organization.

This archive contains necessary files to perform a discriminant analysis in order to classify the Kandabadicivirus sequence among many hosts: arthropods, birds, mammals, mollusks, and plants.

First, decompress the fasta sequences (sequences.zip) in a directory named sequences. Then:

for i in sequences/*.fasta; do
   echo $i;
   python3 scripts/fasta2count.py $i ${i%.fasta}.csv;
done

You now have csv files along with corresponding fasta files (csv are provided in this archive).

You can now perform discriminantAnalysis.R in R software to obtain the discriminant analysis and make a graphical output named "discrimin.pdf".